TABLE 1.

Sources, origins, and genotypes of A. fumigatus isolates obtained by Afut1 and CSP sequence analysis

IsolateOutbreakOriginSourceYr of outbreakAfut1 typeaCSP type(s)a,b
648OB1CaliforniaClinical2001311
610OB1CaliforniaEnvironment2001411
650OB1CaliforniaEnvironment2001311
606OB1CaliforniaClinical2001712
607OB1CaliforniaClinical2001812
633OB1CaliforniaClinical2001912
683OB1CaliforniaClinical2001912
686OB1CaliforniaClinical2001912
B5850OB2CaliforniaClinical19983723
B5854cOB2CaliforniaClinical19983723
B5855OB2CaliforniaClinical19983723
B5852cOB2CaliforniaClinical19983723
B5856cOB2CaliforniaClinical19983723, 23
B5868OB2CaliforniaEnvironment19983723
38OB2CaliforniaClinical1998NDe23
B5863OB2CaliforniaEnvironment19983723
B5861OB2CaliforniaEnvironment1998ND21
B5859OB2CaliforniaClinical19983824
B5866OB2CaliforniaEnvironment19983733, 33
B5355OB3New YorkClinical19922232
B5360OB3New YorkEnvironment19923333
B5357OB3New YorkEnvironment19922434
B5361OB3New YorkClinical19923231
B5358OB3New YorkClinical1992ND31, 31
B5450OB3New YorkClinical1992ND31
4339OB4ColoradoClinical20057341
4340OB4ColoradoClinical20057444, 44
3960cOB4ColoradoClinical20057543, 43
3957cOB4ColoradoClinical20057642
33dOB5GeorgiaClinical20029151
35dOB5GeorgiaEnvironment20029252
34dOB5GeorgiaClinical20029353
B6069OB6CanadaClinical20024161
B6070OB6CanadaClinical20024161
B6071OB6CanadaClinical20024161
B6072OB6CanadaClinical20024161, 61
B6073OB6CanadaClinical20024161
B6075cOB6CanadaEnvironment20024161, 61
B6077OB6CanadaEnvironment20024161
B6079OB6CanadaEnvironment20024161, 61
B6074OB6CanadaClinical20024161
B6076OB6CanadaEnvironment20024161
B6078OB6CanadaEnvironment20024161
B6081OB6CanadaEnvironment20024161, 61
97OB6CanadaClinical20024264
99cOB6CanadaClinical20024264
101OB6CanadaClinical20024364
103cOB6CanadaClinical20024465
105OB6CanadaClinical20024566
B6083OB6CanadaEnvironment20024662, 62
B6084OB6CanadaEnvironment20024662, 62
B6082OB6CanadaEnvironment20024662
127OB6CanadaEnvironment20024662, 62
129OB6CanadaEnvironment20024763
131OB6CanadaEnvironment20024862
ATCC 16903ATCC571
ATCC 42202ATCC582
  • a Afut1 and CSP type discrepancies are shown in bold type.

  • b Some isolates were subjected to CSP typing twice. The second CSP type is the CSP type obtained after repeat DNA extraction and sequence analysis.

  • c Isolates tested for reproducibility of the assay.

  • d Isolates from an outbreak in a chicken house.

  • e ND, not done.