TABLE 1.

T. brucei DNAs containing 5MC

Locus name or descriptionDNALocus IDaE value
40S ribosomal protein S14PFTb11.03901.10E-35
ATP-dependent DEAD/H DNA helicase recQBFTb927.6.35808.60E-102
Chaperone protein DNAJPFTb11.01.84807.30E-188
Chaperone protein DNAJPFTb10.70.01703.80E-85
Cytochrome oxidase subunit XPFTb11.01.47024.30E-13
Developmentally regulated GTP-binding proteinPFTb09.211.07201.00E-86
DNA-directed RNA polymerase II, subunit 2PFTb927.4.38101.60E-42
Electron transfer flavoprotein-ubiquinone oxidoreductasePFTb927.8.12406.80E-46
Elongation factor 1αPFTb10.70.56504.00E-93
Elongation factor 2PFTb10.70.26504.40E-45
Eukaryotic translation initiation factor 3, subunit 7-like proteinBFTb927.6.43703.70E-143
Expression site-associated gene (pseudogene)BFTb927.3.25301.80E-22
GSS (unannotated)bBFAL454589 (GenBank)1.30E-145
GSS (unannotated)bBFAQ642500 (GenBank)6.00E-46
Hypothetical proteinPFTb10.v4.00823.90E-07
Hypothetical proteinBFTb927.5.297b4.90E-54
Hypothetical protein, conservedPFTb927.7.25601.30E-93
Hypothetical protein, conservedPFTb927.8.73603.60E-69
Hypothetical protein, conservedPFTb927.8.26601.40E-65
Hypothetical protein, conservedPFTb927.7.61301.60E-23
Hypothetical protein, conservedPFTb11.01.25403.60E-44
Hypothetical protein, conservedPFTb09.160.55705.50E-46
Hypothetical protein, conservedPFTb10.26.09105.30E-124
Hypothetical protein, conservedPFTb927.1.39101.10E-87
Hypothetical protein, conservedPFTb09.211.25502.00E-72
Hypothetical protein, conservedPFTb927.8.32308.10E-18
Hypothetical protein, conservedBFTb927.5.27702.10E-63
Hypothetical protein, conservedBFTb09.160.48706.40E-209
Hypothetical protein, conservedBFTb927.4.18901.30E-67
Hypothetical protein, conservedBFTb927.4.24701.10E-123
Hypothetical protein, conservedBFTb11.02.25202.70E-21
Hypothetical protein, conservedBFTb10.406.06201.30E-76
Hypothetical protein, conservedBFTb927.6.4101.80E-183
Hypothetical protein, conservedBFTb927.2.24102.10E-132
Hypothetical protein, conservedBFTb11.55.00223.30E-58
Hypothetical protein, conservedBFTb927.8.54907.10E-134
Hypothetical protein, conservedBFTb927.3.38301.20E-136
Intergenic sequencecPFBetween Tb11.01.3790 and Tb11.01.38007.00E-74
Intergenic sequencec,dPFBetween Tb11.14.0010 and Tb11.14.00112.60E-35
Intergenic sequencecBFBetween Tb927.2.2590 and Tb927.2.26503.60E-94
Intergenic sequencecBFBetween Tb09.160.0790 and Tb09.v1.00807.60E-16
Intergenic sequencecBFBetween Tb09.160.2360 and Tb09.160.23701.20E-56
KinesinPFTb927.7.30002.70E-183
KinesinBFTb927.5.24101.70E-159
Minichromosome maintenance complex subunitPFTb11.02.57301.50E-43
Procyclin-associated gene 2 proteinBFTb10.70.13001.70E-33
Proteasome regulatory ATPase subunit 3PFTb927.6.10906.40E-132
Protein kinaseBFTb927.5.33208.40E-115
Receptor-type adenylate cyclase GRESAG 4BFTb927.4.44501.40E-127
RHS proteinPFTb927.2.4501.40E-144
RHS proteinBFTb927.2.3703.10E-155
RHS proteinBFTb927.1.708.70E-183
RHS pseudogenePFTb927.1.901.70E-69
RHS pseudogeneBFTb11.18001.50E-103
RHS pseudogeneBFTb927.1.4302.50E-81
RNA-binding proteinPFTb927.8.41701.90E-80
RuvB-like DNA helicaseBFTb927.4.12707.60E-132
Serine/threonine protein kinaseBFTb09.160.10901.10E-140
SLACS retrotransposable element (part)PFTb09.211.50103.00E-122
VSG pseudogenePFTb11.21.00023.10E-11
VSG pseudogenePFTb927.6.52103.00E-76
VSG pseudogenePFTb927.3.1701.00E-60
VSG pseudogeneBFTb11.16.00042.40E-163
Vesicular transport protein (CDC48 homologue)PFTb11.55.00141.40E-75
Zeta tubulinBFTb927.1.11501.30E-56
  • a The sequence overlaps with the open reading frame; the GeneDB locus identity (ID) is provided unless otherwise indicated.

  • b Sequences found in the GSS (genome survey sequence) database but not the assembled genome.

  • c Found between two protein-coding genes.

  • d Found between two VSG pseudogenes.