TABLE 3.

Comparison between clade assignments, ABC genotypes, and mating types for isolates from the present study and those reported by Odds et al. (33)

Group characteristic (reference or source)% of isolates from the work of Odds et al. (33)No. (%) of isolates
TotalaCladeSingleton
1234567891011121314151617
North American isolates (33)201 (14.7)99 (49.3)20 (10.0)31 (15.4)18 (9.0)1 (0.5)4 (2.0)1 (0.5)4 (2.0)5 (2.5)0 (0.0)6 (3.0)1 (0.5)0 (0.0)1 (0.5)2 (1.0)0 (0.0)2 (1.0)6 (3.0)
Human group 1 (this study)44 (100)26 (59.1)4 (9.1)8 (18.2)0 (0.0)0 (0.0)0 (0.0)1 (2.3)3 (6.8)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)2 (4.5)
All human isolates (this study)55 (100)30 (54.5)5 (9.1)9 (16.4)1 (1.8)1 (1.8)0 (0.0)1 (1.8)4 (7.3)0 (0.0)0 (0.0)2 (3.6)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)2 (3.6)
Wildlife isolates (this study)28 (100)7 (25.0)0 (0.0)3 (10.7)1 (3.6)0 (0.0)0 (0.0)0 (0.0)10 (35.7)2 (7.1)1 (3.6)2 (7.1)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)2 (7.1)
Wildlife isolates, no replicates22 (100)6 (27.3)0 (0.0)3 (13.6)1 (4.5)0 (0.0)0 (0.0)0 (0.0)6 (27.3)2 (9.1)1 (4.5)1 (4.5)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)2 (9.1)
Domestic animal isolates5 (100)4 (80.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)1 (20.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)
All isolates (this study)88 (100)41 (46.6)5 (5.7)12 (13.6)2 (2.3)1 (1.1)0 (0.0)1 (1.1)15 (17.0)2 (2.3)1 (1.1)4 (4.5)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)4 (4.5)
    ABC genotype83 (100)
        A64.155 (66.3)40 (72.7)5 (9.1)0 (0.0)0 (0.0)0 (0.0)0 (0.0)1 (1.8)3 (5.5)2 (3.6)0 (0.0)1 (1.8)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)3 (5.5)
        B23.024 (28.9)0 (0.0)0 (0.0)12 (50.0)2 (8.3)1 (4.2)0 (0.0)0 (0.0)6 (25.0)0 (0.0)1 (4.2)1 (4.2)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)1 (4.2)
        C12.94 (4.8)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)3 (75.0)0 (0.0)0 (0.0)1 (25.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)
    Mating type83 (100)
        a91.580 (96.4)40 (50.0)3 (3.8)12 (15.0)2 (2.5)1 (1.3)0 (0.0)1 (1.3)11 (13.8)2 (2.5)1 (1.3)3 (3.8)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)4 (5.0)
        a/a2.52 (2.4)0 (0.0)1 (50.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)1 (50.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)
        α/α6.01 (1.2)0 (0.0)1 (100)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)0 (0.0)
  • a Total numbers of isolates are different in terms of some variables. If two strains from the same animal were different with respect to the variable considered, both strains were included in the count. If the strains were the same for the given variable, only one strain was included in the count.