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Protein Arginine Methylation in Candida albicans: Role in Nuclear Transport

Anne E. McBride, Cecilia Zurita-Lopez, Anthony Regis, Emily Blum, Ana Conboy, Shannon Elf, Steven Clarke
Anne E. McBride
1Department of Biology, Bowdoin College, Brunswick, Maine 04011
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  • For correspondence: amcbride@bowdoin.edu
Cecilia Zurita-Lopez
2Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095
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Anthony Regis
1Department of Biology, Bowdoin College, Brunswick, Maine 04011
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Emily Blum
1Department of Biology, Bowdoin College, Brunswick, Maine 04011
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Ana Conboy
1Department of Biology, Bowdoin College, Brunswick, Maine 04011
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Shannon Elf
1Department of Biology, Bowdoin College, Brunswick, Maine 04011
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Steven Clarke
2Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095
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DOI: 10.1128/EC.00074-07
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  • FIG. 1.
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    FIG. 1.

    Hmt1 is functionally conserved between S. cerevisiae and C. albicans. (A) Clustal W alignment (9) of type I arginine methyltransferase proteins Saccharomyces cerevisiae Hmt1 (S. cer.), Candida albicans Hmt1 (C. alb.), and human PRMT1 (H. sap.) HRMT1L2v.1 (35). Indicated motifs include conserved methyltransferase motifs (I, post-I, II, and III) that mediate binding to the enzyme cofactor AdoMet, double-E (bold) and THW loop motifs common to protein methyltransferases, and the “antenna” domain (positions 175 to 204) that mediates dimerization of S. cerevisiae Hmt1 through hydrophobic interactions with the AdoMet-binding domain (dashed boxes) (44). Asterisks denote identical residues in all sequences, colons denote conserved substitutions, and periods denote semiconserved substitutions. (B) S. cerevisiae strains that require HMT1 due to the presence of the npl3-1 mutation (PSY866) or deletion of the 80-kDa cap-binding protein gene (PSY1191) were transformed with CEN LEU2 plasmids that express either no Hmt1 (vector, pRS315) or one of the arginine methyltransferases shown in panel A (Sc, S. cerevisiae Hmt1, pPS1872; Ca, C. albicans Hmt1, pAM160; Hs, H. sapiens PRMT1, pAM161). The functionality of each methyltransferase was tested by incubation on medium containing 5-FOA, which selects for loss of a URA3 ScHMT1 expression plasmid, at 25°C (hmt1Δ npl3-1) or 30°C (hmt1Δ cbp80Δ) for 3 days. (C). An hmt1Δ S. cerevisiae strain (PSY865) was transformed with the plasmids described for panel B, and grown at 30°C to mid-log phase, and lysed in radioimmunoprecipitation assay buffer. Total protein (5 μg) was analyzed by immunoblotting with polyclonal antisera raised against ScHmt1 (27) and ScNpl3 (7) from S. cerevisiae and a monoclonal antibody that specifically recognizes methylated ScNpl3 (1E4) (38, 46). (D) A PrA fusion to S. cerevisiae Hmt1 (+) was expressed from pAM91 in cells expressing untagged ScHmt1 (Sc; pPS1307), CaHmt1 (Ca; pAM390), or ScHmt1 lacking the antenna domain (Scm; pPS2575). CaHmt1 was also expressed in the presence of the PrA vector (−; pNOPPATA). Proteins from mid-log-phase cells were precipitated with IgG-Sepharose. Proteins isolated from 0.5 mg lysate (beads) and 10 μg lysates were analyzed by immunoblotting with anti-ScHmt1 antiserum, which also binds to PrA.

  • FIG. 2.
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    FIG. 2.

    C. albicans Hmt1 is not essential and is the major PRMT. (A) hmt1Δ/hmt1Δ (AMC11; HMT1−) and hmt1Δ/hmt1Δ+HMT1 (AMC14; HMT1+) C. albicans strains were created using a PCR-based strategy. Total protein (10 μg) from these strains was analyzed by immunoblotting with anti-ScHmt1 antiserum. (B) C. albicans strains were labeled in vivo with [3H]AdoMet as described in Materials and Methods. Proteins in cell extracts (50 μg) were resolved by SDS gel electrophoresis and analyzed by Coomassie blue staining and fluorography. The dried gel was exposed to Kodak X-Omat AR film at −80°C for 10 days to detect methylated proteins. Arrows indicate major 3H-methylated polypeptides found in the hmt1Δ/hmt1Δ+HMT1 strain (AMC14; HMT1+) expressing the methyltransferase and absent or greatly reduced in the mutant hmt1Δ/hmt1Δ strain (AMC11; HMT1−). (C) Amino acid analysis of C. albicans proteins from lysed cells in vivo labeled with [3H]AdoMet. Acid-hydrolyzed proteins (150 μg) were fractionated on a cation-exchange column as described in Materials and Methods. Radioactivity (3H) (solid line) was determined by scintillation counting. Nonradiolabeled amino acid standards of ADMA, ω-MMA, and SDMA were added to the hydrolysate and detected using a ninhydrin assay (dashed line). The upper panel shows the labeling in cells expressing Hmt1 (AMC14; HMT1+), and the lower panel shows the labeling in cells lacking Hmt1 (AMC11; HMT1−). The radioactivity in the off-scale fractions of the upper panel is 2,625 for fraction 72, 5,707 for fraction 73, and 1,172 for fraction 87. In these experiments, the 3H-labeled methylated derivatives eluted slightly earlier than the nonisotopically labeled standards due to an isotope effect (18).

  • FIG. 3.
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    FIG. 3.

    C. albicans Rmt2 catalyzes the formation of δ-MMA as a minor PRMT. (A) C. albicans strains RMT2/rmt2Δ (AMC28; RMT2+) and rmt2Δ/rmt2Δ (AMC30; RMT2−) were labeled in vivo with [3H]AdoMet as described in Materials and Methods. Proteins in cell extracts (50 μg) were analyzed by SDS gel electrophoresis as described in the legend to Fig. 2. The dried gel was exposed to Kodak BioMax MS film at −80°C for 10 days. (B) Amino acid analysis of C. albicans proteins from lysed RMT2/rmt2Δ and rmt2Δ/rmt2Δ cells labeled in vivo with [3H]AdoMet as described in the legend Fig. 2. The upper panel shows the labeling in cells expressing Rmt2 (AMC28; RMT2+), and the lower panel shows the labeling in rmt2Δ/rmt2Δ cells (AMC30; RMT2−). The arrow indicates the peak that decreases in the absence of Rmt2. The radioactivity in the off-scale fractions for the upper panel is 2,062 for fraction 73, 2,759 for fraction 74, and 1,079 for fraction 75; for the lower panel it is 1,973 for fraction 73 and 1,411 for fraction 74. The radioactive derivatives are expected to elute slightly earlier than the standards, as described in the Fig. 2 legend.

  • FIG. 4.
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    FIG. 4.

    The RGG domain of C. albicans Npl3, but not full-length protein, can function in S. cerevisiae. (A) Clustal W alignment (9) of S. cerevisiae RNA-binding protein Npl3 (S. cer.) and the C. albicans Npl3 ortholog (C. alb.). RNA recognition motifs (RRMs) and arginine-glycine-rich (RGG) domains are shown. Sky1-mediated phosphorylation of serine 411 (bold) in the conserved C-terminal heptapeptide facilitates Npl3 nuclear import in S. cerevisiae (20, 50). SR dipeptides found in S. cerevisiae, but not C. albicans, Npl3 are underlined. Asterisks denote identical residues in all sequences, colons denote conserved substitutions, and periods denote semiconserved substitutions. (B) An S. cerevisiae strain lacking NPL3 (PSY814) was transformed with plasmids that express PrA alone (vector; pNOPPATA) or PrA fused to S. cerevisiae Npl3 (ScNpl3; pPS2389), C. albicans Npl3 (CaNpl3; pAM361), or a chimeric protein composed of the first three domains of ScNpl3 with the RGG domain of CaNpl3 (ScNpl3-CaRGG; pAM362). Cells were grown overnight to mid-log phase in medium lacking leucine and washed, and 10-fold dilutions (106 to 103 cells) were plated on 5-FOA medium and grown at 30°C for 2 days. (C) hmt1Δ (YAM533) and HMT1 (YAM535) S. cerevisiae strains expressing myc-tagged ScNpl3 were transformed with the PrA-Npl3 plasmids shown in panel B. Proteins from mid-log-phase cells were precipitated with IgG-Sepharose. Proteins isolated from 1.7 mg lysate (beads) and total lysates (20 μg) were analyzed by immunoblotting with a polyclonal anti-myc antiserum, which also binds to PrA.

  • FIG. 5.
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    FIG. 5.

    Hmt1 influences nucleocytoplasmic transport of C. albicans Npl3. (A) NPL3 was GFP tagged by homologous recombination in homozygous C. albicans strains with (+; AMC46 and AMC47) or without (−; AMC48 and AMC49) Hmt1. PCR products used for recombination contained either wild-type NPL3 sequences (WT) or introduced a T-to-G mutation in codon 340, encoding an S-to-A (SA) mutation in the C terminus of Npl3. Equal amounts of total protein from mid-log-phase GFP-tagged and parental cells were immunoprecipitated with anti-GFP and PrG-Sepharose. Equal amounts of each precipitate were analyzed by immunoblotting with anti-GFP (from 0.3 mg total protein) and antidimethylarginine antiserum (from 0.6 mg total protein). Parental strains lacking GFP (−; BWP17 [+Hmt1] and AMC36 [−Hmt1]) and an HMT1/HMT1 strain expressing GFP alone (G; MLR62) were used as controls. (B) HMT1/HMT1 (HMT1+; AMC46, AMC47) and hmt1Δ/hmt1Δ (HMT1−; AMC48 and AMC49) strains were grown to mid-log phase and stained with DAPI. Cells were visualized by Nomarski and fluorescence microscopy using GFP and DAPI filters. For each filter, exposure times were equivalent for all strains.

Tables

  • Figures
  • TABLE 1.

    Strains used in this study

    Species and strainGenotypeSource or reference
    S. cerevisiae
        FY23 MAT a ura3-52 trp1Δ63 leu2Δ1 GAL+F. Winston
        PSY865 MATα hmt1Δ::HIS3 ade2 ade8 ura3 leu2 his3 lys1 24
        PSY866 MAT a ade2 ade8 ura3 leu2 his3 lys1 Δhmt1::HIS3 npl3-1 + pPS1307 24
        PSY814 MATα npl3Δ::HIS3 ade2 ade8 can1 ura3 leu2 his3 lys1 trp1 + YCp50-NPL3-3 23
        PSY1191 MAT a ade2 ade8 ura3 leu2 his3 Δhmt1::HIS3 Δcbp80::HIS3 + pPS1307 37
        YAM533 MATα hmt1Δ::HIS3 NPL3-myc::URA3 ade2 ade8 ura3 leu2 his3 lys1 26
        YAM535 MAT a NPL3-myc::URA3 ade2 ade8 ura3 leu2 his3 lys1 26
    C. albicans
        AMC11 hmt1Δ::HIS1 ura3Δ::λimm434::URA3-IRO1 arg4::hisG his1::hisG This study
    hmt1Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC14 hmt1Δ::HIS1 ura3Δ::λimm434::URA3-IRO1 arg4::hisG his1::hisG This study
    hmt1Δ::ARG4::HMT1 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC28 rmt2Δ::HIS1 ura3Δ::λimm434::URA3-IRO1 arg4::hisG his1::hisG This study
    RMT2 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC30 rmt2Δ::HIS1 ura3Δ::λimm434::URA3-IRO1 arg4::hisG his1::hisG This study
    rmt2Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC35 hmt1Δ::HIS1 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    hmt1Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC36 hmt1Δ::HIS1 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    hmt1Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisGThis study
        AMC46 NPL3-GFP::URA3 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    NPL3 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC47 npl3-SA-GFP::URA3 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    NPL3 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC48 NPL3-GFP::URA3 hmt1Δ::HIS1 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    NPL3 hmt1Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisG
        AMC49 npl3-SA-GFP::URA3 hmt1Δ::HIS1 ura3Δ::λimm434 arg4::hisG his1::hisG This study
    NPL3 hmt1Δ::ARG4 ura3Δ::λimm434 arg4::hisG his1::hisG
        BWP17 ura3Δ::λimm434 arg4::hisG his1::hisG 45
    ura3Δ::λimm434 arg4::hisG his1::hisG
        MLR62 ura3Δ::λimm434 ARG4::URA3::arg4::hisG his1::hisG::pTEF1-GFP A. Mitchell
    ura3Δ::λimm434 arg4::hisG his1::hisG
  • TABLE 2.

    Oligonucleotides used in this study

    OligonucleotideSequence (5′→3′)aSite/mutationb
    AM79cccatgcatGCGCATCCGGTAGTCGGTGGAGCNsiI+
    AM80ccccatATGTCTGAATCAGCTACTGATAAATCACNdeI+
    AM81cccatgcatGCGTAAAAAGTAAGTGTATCCACCCNsiI+
    AM82GGCcatATGGAAGTGTCCTGTGGCCAGGCGGNdeI+
    AM113cccactagtCCCTTCATTCCGTAATTTCTGTGSpeI+
    AM114cccctcgagCAGCTCCAGGGAGGGCTTCGXhoI+
    AM117GGTGCATCAGGTGCATCATCAATAACGAC
    AM118GTGATACCATAACCAGCTCAGCCAGCTC
    AM124CCCAAACAAGATGTCTGAATCAGC
    AM125GTTCTGGTGATAAAATAGCTCTCC
    AM131GCTCTTGGTGGTACTGCTAAAAGTGCCG
    AM135GAGGCGGCTTCGGTGGGcCCAGAGGTGGATTTGGApaI+
    AM136CCAAATCCACCTCTGGgCCCACCGAAGCCGCCTCApaI+
    AM141CAGAGGTTCTGTCATTACTGTTGAAAGAGATGACAATCCTccaccaccaagaggtagaggaggtttcagaggtag
    AM142GGCTTACCTGGTTGGTGATCTTTCACGTGGAGCATCTCTgggatcgtatgatccacctctgtcgttg
    AM143ccccatATGGATGGTCCAGTTGAAGTTACTAAACAGNdeI+
    AM144cccggaTCCATAGTACATTCCACTTCTATCTTCTCCGBamHI+
    AM145CCAATATAGATTATATCCCAAACAAGATGTCTGAATCAGCTACTGATAAATCACAATTGTC gttttcccagtcacgacgtt
    AM146GGCTTTGGGGAGAAATATAATAGGGATATACCAGTCTACACATTACGAACACCAATACTA GCtgtggaattgtgagcggata
    AM147CCATATATCAACTCCTTCCCATTTTCCTTCTTATCTTTCCACCCCCACACACCCCTTATCAAT gttttcccagtcacgacgtt
    AM148CTTCATAAATTATTTGTCTATCAGCTCCTAATCCATTGAAAAATGAGAAAATCCCATGAGG tgtggaattgtgagcggata
    AM154ACACAAGACATATTCCTGGGCAGC
    AM167AACAAACCCACTCATCTCATCAAAA
    AM170CTGAGCTGGCTGAGCTGGTTATGGTAT
    AM173GGATACGATCGTGATAACTTCAACGACAGAGGTGGATCATACGATCGTGAAAGATCTCC AACCCGTTTTggtggtggttctaaaggtgaagaattatt
    AM199GGTCGCTTTATTTCCGTACCGAG
    AM203GACTACACTCCATTTATTAAAACTGCaATGGAAGAACCNcoI−
    AM204GGTTCTTCCATtGCAGTTTTAATAAATGGAGTGTAGTCNcoI−
    AM208CACAGGTTGCAGAAATTTGATACCC
    AM213GGTATAGAGATGCTGGTTGG
    AM214GTGGAACTGCACACTACTACTAG
    AM244GGATATGATAGAGGTGGATACGATCGTGATAACTTCAACGACAGAGGTGGATCATACG ATCGTGAAAGAgCTCCAACCCGTTTTggtggtggttctaaaggtgaagaattatt
    AM247CAAACTGTAATCTTTTTCTTAATTCCCTTTGGAAACACATCCTAAACGTACTTGATTCTTA GCTGATGTAGtctagaaggaccacctttgattg
    AM258CCAAAATTGGGACAACACC
    • ↵ a Lowercase indicates nucleotide differences from endogenous genes. Introduced or deleted restriction sites are underlined.

    • ↵ b +, introduced restriction site; −, deleted restriction site.

  • TABLE 3.

    Plasmids used in this study

    PlasmidFeaturesSource or reference
    pAM91 CEN LEU pNop-PrA-ScHMT1 AmprThis study
    pAM160 CEN LEU2 ScHMT1p-CaHMT1 AmprThis study
    pAM161 CEN LEU2 ScHMT1p-HsPRMT1 AmprThis study
    pAM322 CEN LEU2 CaHMT1 AmprThis study
    pAM361 CEN LEU pNop-PrA-CaNPL3 AmprThis study
    pAM362 CEN LEU pNop-PrA-ScNPL3-CaRGG AmprThis study
    pAM385 URA3 CaHMT1 AmprThis study
    pAM390 CEN URA3 CaHMT1 AmprThis study
    pAM463 CEN LEU pNop-PrA-ScNPL3-ApaI AmprThis study
    pBSK-URA URA3 Ampr 30
    pDS10 URA3 Ampr 30
    pGEMHIS1 HIS1 Ampr 45
    pMG1602 GFP URA3 Ampr 19
    pNOPPATA CEN LEU pNop-PrA Ampr vector 22
    pPS1302GST-HsPRMT1v2 Ampr 35
    pPS1307 CEN URA3 ScHMT1 Ampr 24
    pPS1872 CEN LEU2 ScHMT1 Ampr 27
    pPS2389 CEN LEU pNop-PrA-ScNPL3 Ampr 49
    pPS2575 CEN URA3 ScHMT1-Δantenna Ampr 44
    pRSARG4ΔSpeI ARG4 Ampr 45
    pRS315 CEN LEU2 Ampr vector 39
    pRS316 CEN URA3 Ampr vector 39
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Protein Arginine Methylation in Candida albicans: Role in Nuclear Transport
Anne E. McBride, Cecilia Zurita-Lopez, Anthony Regis, Emily Blum, Ana Conboy, Shannon Elf, Steven Clarke
Eukaryotic Cell Jul 2007, 6 (7) 1119-1129; DOI: 10.1128/EC.00074-07

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Protein Arginine Methylation in Candida albicans: Role in Nuclear Transport
Anne E. McBride, Cecilia Zurita-Lopez, Anthony Regis, Emily Blum, Ana Conboy, Shannon Elf, Steven Clarke
Eukaryotic Cell Jul 2007, 6 (7) 1119-1129; DOI: 10.1128/EC.00074-07
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    • ABSTRACT
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KEYWORDS

Active Transport, Cell Nucleus
Arginine
Candida albicans
Protein-Arginine N-Methyltransferases
Repressor Proteins
Saccharomyces cerevisiae Proteins

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