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Eukaryotic Cell, March 2008, p. 483-492, Vol. 7, No. 3
1535-9778/08/$08.00+0 doi:10.1128/EC.00445-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Division of Infectious Diseases, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California 90502,1 Department of Medicine, David Geffen School of Medicine at University of California—Los Angeles, Los Angeles, California 900242
Received 7 December 2007/ Accepted 18 December 2007
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Virulence factors in C. albicans include proteins that mediate adherence to and invasion of host tissues (43), morphological change from yeast to hyphae (29, 30), secretion of lytic enzymes (17, 27, 41), maintenance of cell wall integrity (55), and avoidance of the host immune response (39). Many of these virulence factors are glycosylphosphatidylinositol (GPI)-anchored proteins, which comprise 88% of all covalently linked cell wall proteins in C. albicans (23). Examples of GPI-anchored virulence factors are Phr1p and Phr2p, which mediate cell wall biogenesis and hyphal formation in response to changes in pH (15); Hwp1p, an epithelial adhesin and biofilm promoter (32) that is required for virulence during murine hematogenously disseminated candidiaisis (48); Als1p and Als3p, adhesins with broad substrate specificity (13, 22, 43); and Gpi7, an antivirulence factor that reduces candidal resistance to macrophages and virulence in mice (36). Numerous GPI proteins have been identified as virulence factors in C. albicans.
To identify new virulence factors in C. albicans, we used a conditional gene overexpression/suppression approach to screen a library of genes encoding GPI-anchored proteins for virulence phenotypes. We used the strong tetracycline-regulated (TR) promoter to control gene expression (31, 42). In the presence of the tetracycline analogue doxycycline (DOX), the expression of genes controlled by the strong TR promoter is suppressed. In contrast, in the absence of DOX, the gene is potentially overexpressed. By simultaneously screening for gain and loss of function, we identified a gene, IFF4, that had contrasting functions in distinct anatomical contexts, promoting epithelial cell adherence but also ameliorating virulence during disseminated infection in mice.
(This work was presented in part at the 47th Interscience Conference on Antimicrobial Agents and Chemotherapy, Chicago, IL, 17 to 20 September 2007, abstr. B-1445.)
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TABLE 1. C. albicans strains in this study
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TABLE 2. Oligonucleotides used in this study
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C. albicans THE4 was utilized to generate a GPI gene overexpression library using the strategy outlined in Fig. 1. Briefly, two rounds of PCR were used to generate fragments C and D. In the first round of PCR, the flanking regions on both sides of the desired integration site were amplified using primers P1 and P3 to yield fragment A (an upstream sequence of the targeted gene), and primers P2 and P4 were used to yield fragment B (approximately 500 bp from the start of the targeted gene). Primers P3 and P2 contained a 5' extension (25 bp) that was complementary to the 5' HIS1 or 3' TR promoter sequence, respectively (Fig. 1). The second round of PCR utilized primers P1 and PH1 to obtain fragment C, which contained an approximately 500-bp sequence upstream of the ORF of the targeted gene, as well as a 3'-truncated HIS1. Similarly, fragment D containing a 5'-truncated HIS1, an intact TR promoter, and approximately 500 bp from the start of the ORF of the targeted gene was generated by using primers PH2 and P4. Therefore, fragments C and D contained flanking sequences to target integration and overlapping, nonfunctional fragments of the HIS1 selection marker.
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FIG. 1. Diagram detailing our split-marker strategy to insert the TR promoter in front of the gene encoding putative GPI-anchored proteins.
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Construction of strain CAA10-31, in which both IFF4 alleles are controlled by the TR promoter. The C. albicans strain in which one allele of IFF4 was controlled by the TR promoter (strain CAA10) was cultured on plates containing 5-FOA, yielding strain CAA10-1. The resulting strain, lacking the URA3 marker, was utilized to construct strain CAA10-31, in which both alleles of IFF4 were controlled by the TR promoter, as outlined in Fig. 2. Briefly, a recyclable URA3 cassette (54) was used to disrupt the second URA3 allele. Clones were screened by PCR using primers P6 and P5 to confirm disruption of the second allele (i.e., the one not controlled by the TR promoter). After CAA10-2 was cultured on 5-FOA plates, clones in which interchromosomal recombination occurred, resulting in both alleles being controlled by the TR promoter, were selected, yielding strain CAA10-3. URA3 (from a 3.9-kb NheI-PstI fragment containing the URA3-IRO1 gene) was inserted into its original locus on the CAA10-3 chromosome, resulting in strain CAA10-31. The same URA3-IRO1 fragment was integrated into THE3, resulting in THE31, a control strain of CAA10-31.
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FIG. 2. Overexpression of GPI-anchored proteins does not affect the expression of Als1p, a known GPI-anchored protein. Twelve overexpression strains and one control strain were screened by flow cytometry. A representative strain is shown; all other strains demonstrated equivalent characteristics. The strains were grown under conditions in which Als1p was either known not to be expressed or known to be expressed (13). Overexpression of the GPI protein had no effect on Als1p surface accumulation (no difference between the results without DOX [–DOX] and with DOX [+DOX]).
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Effects of overexpression of 12 GPI-anchored proteins on Als1p, another GPI-anchored protein. Twelve strains overexpressing RBT1, PGA8, SAP9, PLB3, PLB5, SOD6, HYR1, IFF2, IFF3, IFF4, FGR23, or PGA55 were constructed in the library and were grown in YPD in the presence or absence of DOX. Overexpression and suppression of these genes encoding GPI-anchored proteins were confirmed by RT-PCR. We then used direct immunofluorescence, as we have described previously (13), to quantify the degree of surface expression of Als1p in each of the 12 strains. In brief, the strains were incubated in RPMI 1640 medium with glutamine for 1 h at room temperature to induce Als1p expression. Als1p was detected and quantified by incubating intact organisms with a fluorescein isothiocyanate-labeled anti-Als1p monoclonal antibody for 1 h. As a negative control, the strains were labeled with a fluorescein isothiocyanate-labeled nonspecific mouse isotype-matched control antibody. Flow cytometry was then performed to determine the relative expression of Als1p in each strain grown in the presence or absence of DOX using a FACSCaliber (Becton Dickinson) flow cytometer. The mean fluorescence intensities of 104 events were calculated using CELLQUEST software.
Adherence assays. Adherence to plastic was tested by growing strains in YPD medium with or without DOX to early stationary phase in culture tubes (Falcon). The fungal cultures were discarded, and the tubes were gently washed three times with tap water. Adherence to plastic was assessed visually. No difference in the morphologies of overexpressing, suppressing, or wild-type strains was identified.
Adherence of IFF4 overexpression/suppression mutants to the FaDu oral epithelial cell line (ATCC) and endothelial cells was also assessed. FaDu cells were maintained in minimal essential medium-Earl's salts (Irvine Scientific) containing 10% fetal bovine serum, 1 mM pyruvic acid, 2 mM L-glutamine, 0.1 mM nonessential amino acids, 100 IU/ml penicillin, and 100 IU/ml streptomycin. The cells were grown to confluence in six-well tissue culture plates (Costar, Van Nuys, CA) prior to performance of the adherence assay. Endothelial cells were obtained from human umbilical veins as we have described previously (13, 21), and second-passage cells were grown to confluence in six-well tissue culture plates coated with 0.2% gelatin matrix (Collaborative Biomedical Products, Bedford, MA). After the cell monolayers were rinsed twice with prewarmed Hanks balanced salt solution (HBSS), blastospores (3 x 102 cells/ml of HBSS) grown in either YPD with DOX or YPD without DOX for 19 h at 25°C were added to each well. The plate was incubated in 5% CO2 at 37°C for 30 min, after which the nonadherent organisms were aspirated and the FaDu or endothelial cell monolayers were rinsed twice with 10 ml of HBSS in a standardized manner. A 1.5-ml volume of YPD was added to each well and allowed to solidify. After the plate was incubated at 37°C for 24 h, the number of adherent organisms was determined by colony counting. Adherence was expressed as a percentage of the initial inoculum, which was confirmed by quantitative culturing in YPD agar. Each adherence assay was performed in triplicate on three separate occasions.
Endothelial cell damage assay. The ability of IFF4 overexpression/suppression to modulate C. albicans-induced endothelial cell injury was determined with the chromium (51Cr) release assay in 96-well tissue culture plates as described previously (52).
Neutrophil-mediated killing assay. In vitro human neutrophil-mediated killing was quantified by a modification of our previously described method (46). Briefly, 4 x 104 purified neutrophils were cocultured with 2 x 104 C. albicans cells (2:1 ratio) for 1 h at 37°C in RPMI plus 10% pooled human serum (Sigma-Aldrich). The cultures were sonicated to kill residual neutrophils, serially diluted, overlaid with YPD, and incubated overnight at 37°C. CFU were counted and compared to the number of CFU plated from C. albicans cultures without neutrophils to assess killing of C. albicans.
Murine models. The effect of IFF4 overexpression/suppression on the virulence of C. albicans was assessed in the murine models of vaginal candidiasis (47) and hematogenously disseminated candidiasis. For the vaginal model, BALB/c mice (Charles River) were treated with estradiol valerate (30 µg subcutaneously) in peanut oil (both from Sigma-Aldrich) on day –3 relative to infection to induce pseudoestrus. On the day of infection, mice were sedated by intraperitoneal administration of 100 mg/kg of body weight of ketamine. The sedated mice were infected intravaginally with 106 blastospores of C. albicans in 10 µl of endotoxin-free phosphate-buffered saline. On day 1 postinfection, the vaginas and approximately 1 centimeter of each uterine horn were dissected en bloc, homogenized, and quantitatively cultured.
For survival studies, male BALB/C mice were infected with 5 x 105 blastospores of C. albicans through the tail vein (21). The mice were monitored three times daily, and moribund mice were euthanized. A second group of mice were infected and sacrificed 5 days postinfection to determine the tissue fungal burden. Kidneys, brain, and liver were removed, homogenized, and quantitatively cultured on YPD containing 50 µg/ml chloramphenicol. Values were expressed as log CFU per gram of tissue.
The mice were given food and water ad libitum throughout the course of the experiment. Mice infected with IFF4 conditional overexpression/suppression or control strains were given water with or without DOX (2 mg/ml) dissolved in 5% sucrose solution throughout the period of the experiment starting from day –2 relative to infection (42). All procedures involving mice were approved by the institutional animal use and care committee, following the National Institutes of Health guidelines for animal housing and care.
In vivo expression of IFF4. IFF4 expression by wild-type C. albicans SC5314 was examined in the models of vaginal or hematogenous disseminated candidiasis. BALB/c mice were infected intravaginally or intravenously as described above. Twenty-four hours later, the mice were sacrificed and the vaginas or kidneys were collected as described above, cut into small pieces, and put into a red tube (Q-BIOgene) with a 1/4-inch ceramic bead (Q-BIOgene). Next, the samples were frozen in liquid nitrogen in the presence of 1 ml Tri reagent (Ambion) and homogenized twice with Fastprep FP120 (Bio 101 Thermo Electro corporation) at speed 4 for 25 seconds. Total-RNA samples were extracted according to the manufacturer's instructions. cDNA synthesis and RT-PCR were carried out as outlined above, except that IFF4-specific primers 1 and 2 were used to amplify IFF4-specific bands and primers EFB1a and EFB1b were used to amplify the housekeeping gene, EFB1 (Table 2). The PCR conditions were as follows: denaturing at 94°C for 2 min and amplification for 40 cycles at 94°C for 1 min, 52°C for 1 min, and 72°C for 2 min.
Statistical analysis. Adherence and neutrophil-mediated killing were compared by the Mann-Whitney U test for unpaired comparisons. The nonparametric log rank test was utilized to determine differences in the survival times of the mice. Tissue fungal burdens among different groups were compared by the Steel test for nonparametric multiple comparisons (35) or the Mann-Whitney U test for unpaired comparisons, as appropriate. P values of <0.05 were considered significant.
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To determine if overexpression of a GPI-anchored protein affected the expression of other GPI proteins, we investigated the expression of Als1p (a known GPI-anchored protein) in 12 randomly picked strains, each of which overexpressed a different GPI-anchored protein. Als1p surface accumulation was quantified by direct immunofluorescence and flow cytometry (13). No effect on Als1p surface accumulation was detected among the 12 strains tested (Fig. 2).
To screen the library for an adherence function, we grew the overexpression strains in plastic tubes containing YPD with or without DOX. One clone, overexpressing the IFF4 gene, demonstrated enhanced adherence to plastic (Fig. 3). This clone was selected for further study. The other library strains showed no enhanced adherence to plastic.
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FIG. 3. Overexpression of IFF4 induces adherence of C. albicans to culture plastic tubes. The control strain used was C. albicans THE2.
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FIG. 4. Strategy to generate a homozygous mutant in which both alleles of the desired gene were controlled by the TR promoter.
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FIG. 5. Overexpression of IFF4 results in enhanced adherence of C. albicans to FaDu epithelial cells. (A) RT-PCR results for IFF4 demonstrating overexpression of the gene without DOX medium and lack of expression with DOX medium. The P2 and P4 primers (Table 2) were used to amplify IFF4. The EFB1 fragment was coamplified and served as a control. Lack of genomic-DNA (gDNA) contamination in cDNA preparations was demonstrated by the absence of a 919-bp band containing the intron of EFB1. THE31 was the control strain, and CAA10-31 was the strain overexpressing IFF4. (B) Adherence of strains THE31 and CAA10-31 grown without DOX (overexpression condition) or with DOX (suppression condition) to FaDu epithelial cells. The data are displayed as the median ± the interquartile. *, P = 0.01 compared to control plus DOX; **, P < 0.002 versus all others.
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FIG. 6. IFF4 overexpression increases the tissue fungal burden in the mouse vagina. (A) Mice (n = 8 per group) infected with C. albicans overexpressing IFF4 had an increased vaginal fungal burden 24 h postinfection compared to the same strain gown with DOX or to a control strain. The data are displayed as the median ± the interquartile. *, P < 0.037 compared to IFF4 plus DOX or the control strain cultured without DOX or with DOX. (B) RT-PCR results demonstrating expression of IFF4 in the mouse vagina infected with wild-type C. albicans. RT-PCR of RNA samples extracted from a mouse vagina infected with C. albicans overexpressing IFF4 was included as a positive control, whereas RNA extracted from uninfected mice was included as a negative control. The EFB1 fragment was coamplified and served as a loading control. Furthermore, lack of genomic DNA (g-DNA) contamination in cDNA preparations was demonstrated by the absence of a 919-bp band containing the intron of EFB1.
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IFF4 overexpression increases neutrophil killing of C. albicans. To define potential interactions of IFF4 with host cells encountered during hematogenously disseminated infection, we investigated the conditional expression strain's ability to bind to or damage endothelial cells and its susceptibility to neutrophil-mediated killing. Overexpression/suppression of IFF4 did not have any effect on C. albicans adherence to or damage of endothelial cells (data not shown). However, C. albicans overexpressing IFF4 (without DOX) was more susceptible to neutrophil-mediated killing in vitro than suppressed cells (with DOX) or the control strain (Fig. 7A).
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FIG. 7. IFF4 overexpression increases neutrophil killing of C. albicans and reduces the severity of hematogenously disseminated candidiasis. (A) In vitro neutrophil-mediated killing of C. albicans strain THE31 or CAA10-31 grown under overexpression or suppression conditions. The data are displayed as the median ± the interquartile. , P < 0.001 compared to IFF4 plus DOX. (B) Survival of mice (n = 8 per group) infected with a control strain or C. albicans IFF4 grown under overexpression or suppression conditions. *, P < 0.002 compared to mice infected with C. albicans IFF4 with DOX or the control strain. The experiment is representative of two studies with similar findings. (C) Burden of C. albicans in kidneys of immunocompetent mice (n = 8 per group) infected with C. albicans IFF4 or a control strain grown under overexpressing (–DOX) or suppressing (+DOX) conditions. Kidneys were harvested 5 days postinfection. The data are displayed as the median ± the interquartile. *, P < 0.025 versus no expression of IFF4 or the control strain. (D) In the absence of neutrophils, the virulence of IFF4-overexpressing C. albicans was restored. Shown is the survival of neutropenic mice (n = 8 per group) infected with a control strain or C. albicans IFF4 grown under overexpression or suppression conditions.
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Because overexpression of IFF4 decreased the virulence of C. albicans in mice infected via the tail vein, we hypothesized that this gene is likely not expressed in the wild-type strain during hematogenously disseminated candidiasis. Consistent with this hypothesis, we could not detect expression of IFF4 by RT-PCR in kidneys harvested from mice 24 h after intravenous infection with wild-type C. albicans (Fig. 8).
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FIG. 8. RT-PCR of RNA samples extracted from mouse kidneys infected with wild-type C. albicans for 24 h. RNA extracted from uninfected mice was included as a negative control, whereas RNA extracted from wild-type C. albicans SC5314 in vitro was included as a positive control. The EFB1 fragment was coamplified and served as a loading control. Lack of genomic-DNA contamination in cDNA preparations was demonstrated by the absence of a 919-bp band containing the intron of EFB1.
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IFF4 belongs to the IFF gene family, which contains 12 members (IFF1 to IFF11 and HYR1) (37). The proteins have a conserved domain that does not display any significant homology to proteins with known functions (5). Most of the IFF family members encode proteins that exhibit the characteristic structure of GPI-anchored cell wall proteins, with the exception of Iff10p and Iff11p, which do not have any signal sequence for GPI anchor linkages (37). In addition, IFF7 appears to be located in the plasma membrane rather than in the cell wall (5). The function of this gene family is largely unknown, with the exception of IFF11, which encodes a secreted protein that is required for cell wall structure and virulence (5). In this study, we found that IFF4 promotes adherence to plastic and epithelial cells, but not endothelial cells. This epithelial adherence function was specific to IFF4, since overexpression/suppression of two other members of the IFF family, namely, IFF2 (HYR3) and IFF3, did not alter adherence (data not shown). The lack of altered adherence in these strains of IFF2 and IFF3 suggests that the adherence function of IFF4 is not localized in the conserved region.
Overexpression of IFF4 also increased the susceptibility of C. albicans to neutrophil-mediated killing in vitro. Susceptibility to neutrophil-mediated killing correlated with diminished virulence of C. albicans overexpressing IFF4 in the hematogenous model of infection using immunocompetent mice. The virulence of C. albicans overexpressing IFF4 was restored in neutropenic mice, emphasizing that the diminished virulence in normal mice was due to enhanced clearance of the yeast by neutrophils. Not surprisingly, wild-type C. albicans did not express the antivirulence factor, IFF4, during hematogenous seeding of the kidney. However, since forced expression of the gene caused a marked decrement in severity of infection, activation of IFF4 expression by small molecules is a potentially novel treatment for disseminated candidiasis.
The virulence factors of C. albicans are complex, and as demonstrated by transcriptional-profiling studies, different virulence factors may be operative in the same organism at different times, depending upon the anatomical context (2, 11, 12, 14). Our data therefore underscore the importance of testing C. albicans virulence factors that directly participate in host interaction in multiple models at different time points, reflecting the diversity of anatomical contexts that represent different in vivo niches of infection.
The advantage of our conditional-expression system is the ability to test both gain and loss of function in the same background strain simultaneously. In Saccharomyces cerevisiae, gene phenotypes and pathway mapping can be achieved by systematic gene overexpression (10, 45). However, in C. albicans, virulence gene function analysis using a similar approach is still in its infancy, despite the fact that gene dosage effects are well documented in the organism (9, 53). Multiple lines of research indicate that overexpression of a gene results in a detectable, authentic phenotype (13, 18-20, 25, 28, 40, 44). Our approach of conditional gene overexpression/suppression circumvents the need to construct a gene-complemented strain to verify virulence phenotypes, as is required in the gene disruption approach. Furthermore, insertion of the TR promoter into one allele is well suited to C. albicans, a diploid organism, because this genetic maneuver maintains the expression of any essential gene(s) even under suppression conditions (with DOX), allowing identification of the virulence function(s) of an essential gene. In contrast, gene disruption cannot be used to study the functions of essential genes.
One concern with using an overexpression strategy is so-called "capacity utilization." For example, overexpression of a particular GPI-anchored protein could potentially result in limited space on the cell surface and restrict the expression of other GPI-anchored proteins. Alternatively, overexpression of a GPI-anchored protein could possibly alter the expression of other proteins because of limited enzyme activity to add GPI anchors. We found no evidence of a capacity utilization problem, as introduction of 12 randomly selected GPI genes, including IFF4, did not alter the surface accumulation of Als1p (another GPI-anchored protein).
In summary, we have described a conditional overexpression/suppression approach that can be broadly used to identify new genes encoding virulence-related phenotypes in C. albicans. This approach allows simultaneous evaluation of gain and loss of function. Using this new approach, we identified IFF4, a gene encoding a GPI-anchored protein, as an epithelial cell adhesin gene that modestly exacerbated mucosal infection in vivo. We also identified IFF4 as encoding an antivirulence factor during hematogenously disseminated infection. These data underscore the need to study virulence genes in multiple anatomical contexts to discern the full potential range of phenotypes and raise the possibility of targeting forced expression of IFF4 as a treatment for disseminated infection.
This study was supported by Public Health Service grant R21 AI066010 and American Heart Association Western State Affiliate grant 0665041Y to Y.F. and Public Health Service grants R01 AI19990 and AI063382 to J.E.E. A.S.I. is supported by Public Health Service grants R01 AI063503 and R21 AI064716. B.J.S. is supported by Public Health Service grants K08 AI060641 and R01 AI072052 and American Heart Beginning Grant-in-Aid 0665154Y.
Published ahead of print on 4 January 2008. ![]()
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