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Eukaryotic Cell, September 2007, p. 1618-1624, Vol. 6, No. 9
1535-9778/07/$08.00+0 doi:10.1128/EC.00229-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Genetics and Developmental Biology, University of Connecticut Health Center, Farmington, Connecticut 06030
Received 27 June 2007/ Accepted 9 July 2007
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In this study we investigated the effects of exogenous choline on the expression of Pfpmt in wild-type and transgenic parasites constitutively expressing this enzyme. We show that exogenous choline induces Pfpmt down-regulation at the transcriptional level as well as via proteasome-mediated degradation.
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Real-time PCR and Northern blot analyses. Wild-type 3D7 and transgenic parasites constitutively expressing PfPMT under the calmodulin promoter (TP-CAM-PfPMT) were synchronized with 5% D-sorbitol and grown to early trophozoite stage in medium without choline. The parasites were resuspended in fresh medium, split into groups with equal starting parasitemia (2%), and cultured for one generation in complete RPMI 1640 medium with 0, 25, 50, 100, 200, 500, or 1,000 µM choline chloride. When the parasitemia was about 10% at the mid-trophozoite stage, the parasites were harvested by saponin treatment. For real time reverse transcription-PCR (RT-PCR) analysis, total RNA was extracted from the parasite pellets by using the TRIzol reagent (Invitrogen) following the manufacturer's instructions. Specifically, 1 µg of total RNA was treated with DNase I (Invitrogen) to remove any contaminating genomic DNA and reverse transcribed. Serial dilutions of recombinant PCR 2.1 plasmids carrying a 470-bp, 540-bp, and 500-bp fragment of the PfPMT, PfTPX1 (PF14_0368 in PlasmoDB 4.4), and PfRAB6 (PF11_0461 in PlasmoDB 4.4) genes, respectively, were used as quantification standards. PfRAB6 and PfTPX1 genes encode P. falciparum rab6 GTPase and 2-Cys peroxiredoxin proteins, respectively (8, 18). The PfPMT, PfTPX1, and PfRAB6 fragments were amplified from total cDNA using a LightCycler (Roche Diagnostics, Mannheim, Germany) with the Fast Start DNA Master SYBR Green I kit according to the manufacturer's protocol. Briefly, 1 µl cDNA sample was added to a reaction mixture (1.6 µl of MgCl2, 3 mM; 2 µl of Fast Start Master SYBR; 0.5 µl of primer mix, 2.5 pmol each; real-time PCR water to 20 µl). The PCR conditions included an initial denaturation for 10 min at 95°C, 40 cycles of 95°C for 10 s, 65°C for 5 s, and 68°C for 10 s, and a final cooling to 40°C. Transcript levels were determined from the standard curve established using the LightCycler software. The relative concentration of transcripts was determined by dividing the PfPMT value by that of PfTPX1 to correct for loading. Relative values of the PfTPX1 transcripts were determined using the PfRAB6 values.
For Northern blot analysis, 5 µg of parasite total RNA was fractionated on a 1.2% formaldehyde-agarose gel and transferred onto Hybond-N nylon membranes (Amersham Life Science). As probes, fragments of PfPMT and PfRAB6 were PCR amplified and radiolabeled with [
-32P]dCTP using a High Prime DNA labeling kit (Roche). The blots were hybridized overnight at 42°C using the ultrasensitive hybridization buffer (Ambion) and washed twice in 1x SSC (0.15 M NaCl plus 0.015 M sodium citrate), 0.1% sodium dodecyl sulfate (SDS), 5 min each, followed by two washes in 0.1x SSC, 0.1% SDS, 15 min each. The blots were exposed to X-ray films to generate signals.
Degradation assay.
To monitor the effect of exogenous choline on the degradation of Pfpmt protein, synchronized wild-type and transgenic parasites at early ring stage (2% parasitemia, 2% hematocrit) were cultured in medium lacking choline until they reached a parasitemia of 10% with 90% of parasites at the early trophozoite stage. Fresh medium containing cycloheximide at a 5-µg/ml final concentration and 0, 500, or 1,000 µM choline chloride were added, and the cultures were incubated at 37°C for an additional 8 h. Parasites were harvested by saponin treatment, and equal amounts of protein extracts were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and used for immunoblotting with antibodies against Pfpmt and translation elongation factor 1
(PfEF-1
) as previously described (3, 22).
Pulse-chase analysis.
A culture of synchronized early ring stage wild-type 3D7 parasites (2% parasitemia, 90% early rings, 2% hematocrit) was incubated at 37°C for about 2 days in medium lacking choline until it reached a parasitemia of 7%. The culture was resuspended in fresh medium lacking choline and L-methionine but containing L-[35S]methionine (0.36 ng/ml; specific activity, 1,175.0 Ci/mmol; Perkin-Elmer, Inc.), mixed thoroughly, and split into fresh culture plates. The parasites were cultured until they reached early trophozoite stage (
18 h). Thereafter, excess cold L-methionine (50 µg/ml final concentration) and 0 or 1 mM (final concentration) choline were added to the cultures, and samples were collected at 0, 2, 4, 6, and 8 h following choline supplementation. Parasites were extracted by saponin treatment and sonicated in lysis buffer (50 mM Tris-Cl, pH 7.5, 150 mM NaCl, 1% Nonidet P-40, 0.5% sodium deoxycholate, with Complete Mini EDTA-free protease inhibitor cocktail). Equal amounts of the soluble extracts were immunoprecipitated using anti-Pfpmt and anti-PfEF-1
polyclonal antibodies. The immunoprecipitated samples were resolved by SDS-PAGE, and the gels were dried and analyzed by autoradiography. The signal intensities were quantified using the ImageJ version 1.37v software (NIH).
Inhibition of proteasome activity.
Synchronized wild-type 3D7 parasites at early ring stage were cultured in medium without choline until they reached the trophozoite stage. The culture was resuspended in fresh medium without choline, but with 5 µg/ml cycloheximide, and split into three groups. The groups were treated with either 30 nM bortezomib, 1 mM choline, or a combination of both and placed at 37°C for an additional 8 h of incubation. Following saponin treatment and sonication, protein extracts were separated by SDS-PAGE and analyzed by immunoblotting using anti-Pfpmt and anti-PfEF-1
antibodies.
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was unaffected by choline supplementation (Fig. 1A). To determine the level of Pfpmt relative to that of the control, PfEF-1
, at different concentrations of choline in the medium, the signal intensities obtained from the Western blots were quantified by densitometry (Fig. 1B). The level of Pfpmt diminished significantly at choline concentrations equal to or higher than 100 µM, with almost complete depletion at 1 mM (Fig. 1B).
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FIG. 1. (A) Effect of exogenous choline on expression of Pfpmt. Soluble protein extracts from wild-type 3D7 parasites cultured with 0, 25, 50, 100, 200, 500, or 1,000 µM choline for one generation were analyzed by Western blotting using anti-Pfpmt antibodies. Antibodies against PfEF-1 were used as a control. (B) Densitometric analysis of the Western blot signal intensities was performed, and the relative values of Pfpmt protein levels were determined by dividing the values of the Pfpmt bands by the respective values of the PfEF-1 bands.
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FIG. 2. (A) Real-time RT-PCR analysis of levels of PfPMT transcripts. Total RNA extracted from wild-type 3D7 parasites cultured in medium containing 0, 25, 50, 100, 200, 500, or 1,000 µM choline for one generation was reverse transcribed and analyzed by quantitative real-time PCR using a specific PfPMT primer pair. PfTPX1 transcript levels were analyzed to check for loading. Relative PfPMT mRNA levels were determined by dividing the obtained PfPMT values by those for PfTPX1. (B) The PfRAB6 transcript values were used to determine the relative values of PfTPX1 as a control. Relative values are shown as means of triplicate samples, with standard deviations indicated by error bars. (C and D) Northern blot analysis of the PfPMT transcript in 3D7 wild-type (C) and TP-CAM-PfPMT transgenic (D) parasites cultured with 0, 50, 200, 500, or 1,000 µM choline. PfRAB6 transcripts were analyzed to check for loading.
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FIG. 3. Effect of exogenous choline on expression of Pfpmt protein in transgenic TP-CAM-PfPMT parasites. Synchronized parasites were cultured in medium with 0 µM (PV-) or 1,000 µM (PV+) choline for 48 h followed by extraction of parasite soluble protein fractions and Western blot analysis using anti-Pfpmt antibodies. Antibodies against PfEF-1 were used as a control.
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FIG. 4. Comparative analysis of the effect of choline on the depletion of Pfpmt levels in wild-type 3D7 and transgenic TP-CAM-PfPMT parasites. Synchronized wild-type 3D7 (3D) and transgenic (PV) parasites were cultured in medium without choline for one generation until they reached the early trophozoite stage. Parasites were resuspended in fresh medium with 5 µg/ml cycloheximide and 0 µM (-) or 1,000 µM (+) choline was added, and the cultures were incubated for 8 h. Parasites were harvested, and extracts were analyzed by Western blotting using anti-Pfpmt antibodies. Antibodies against PfEF-1 were used as a control.
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, probed as the control, remained the same in the absence or presence of choline (Fig. 5). These results demonstrate clearly that choline induces degradation of the Pfpmt protein.
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FIG. 5. Determination of the effect of choline on the depletion of Pfpmt protein. Synchronized wild-type 3D7 parasites were grown without choline for 48 h to the trophozoite stage. Then, 5 µg/ml cycloheximide and 0, 500, or 1,000 µM choline were added, and the cultures were incubated for 6 h. Parasites were harvested, and extracts were analyzed by Western blotting using anti-Pfpmt antibodies. Antibodies against PfEF-1 were used as a control.
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was immunoprecipitated from equal aliquots of the samples, and no changes were detected among choline-treated and untreated samples (Fig. 6A and B, lower panels). Densitometric analysis of the protein band intensities showed a rapid decline in Pfpmt signal density in samples treated with 1 mM choline compared to the untreated samples (Fig. 6C). By Student's t test statistical analysis, Pfpmt protein levels in the presence of choline were found to be significantly lower (P < 0.01) than those in the absence of choline after 4, 6, and 8 h of culture (Fig. 6C). Quantitative analysis revealed a significant difference (P < 0.01) in the half-life of Pfpmt, which was 8 h in the absence of choline and only 5 h in the presence of 1 mM choline (Fig. 6E).
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FIG. 6. Analysis of Pfpmt degradation by pulse-chase. Synchronized wild-type 3D7 parasites grown without choline to early ring stage and 7% parasitemia were resuspended in fresh medium without choline and L-methionine but containing L-[35S]methionine and grown to the trophozoite stage. Excess cold L-methionine and 0 or 1 mM choline were added and the cultures harvested at time points of 0, 2, 4, 6, and 8 h postaddition. Parasite soluble extracts were immunoprecipitated with anti-Pfpmt and anti-PfEF-1 antibodies and resolved by SDS-PAGE, and the gels were dried and analyzed by autoradiography. (A and B) Signals from samples without and with 1 mM choline, respectively. PfEF-1 was used to check for loading. (C) The relative Pfpmt protein values were derived by dividing the Pfpmt band intensity values by the corresponding values for PfEF-1 at each time point. The relative Pfpmt values in the absence and presence of 1 mM choline are depicted as white and black columns, respectively, with the level of statistical significance of the difference (P < 0.01) between the two shown by an asterisk. (D and E) The Pfpmt relative values were expressed as percent protein relative to the protein concentration at time zero, and the half-life of the Pfpmt protein was derived from the log plot of the percent protein level over time of incubation in the absence (D) and in the presence (E) of 1 mM choline.
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FIG. 7. Effect of the proteasome inhibitor bortezomib on choline-induced Pfpmt degradation. Synchronized wild-type 3D7 parasites at early ring stage were cultured in medium without choline to the trophozoite stage. The cultures were resuspended in fresh medium without choline and split into three groups, namely, V (with 30 nM bortezomib and 5 µg/ml cycloheximide), C (with 1 mM choline and 5 µg/ml cycloheximide), and CV (with 1 mM choline, 30 nM bortezomib, and 5 µg/ml cycloheximide), and incubated for 8 h. Parasites were extracted by saponin treatment, and Western blot analysis was performed using anti-Pfpmt and anti-PfEF-1 antibodies.
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Phosphatidylcholine is the major phospholipid component in the membranes of P. falciparum (19). The metabolic pathways used by the parasite for the synthesis of phosphatidylcholine differ from those used by mammals, thus making them attractive targets for development of novel antimalarial agents (17, 21). Although the biosynthesis of phosphatidylcholine in P. falciparum has been well documented to be via the SDPM and the CDP-choline pathways (16), the relative contribution of each of these pathways to the total phosphatidylcholine synthesized remains to be elucidated. In plants, the methylation of phosphoethanolamine provides almost all the phosphocholine that is converted to phosphatidylcholine in the CDP-choline pathway (5, 7). Interestingly, in the plant Lemna paucicostata, the activity of the phosphoethanolamine N-methyltransferase was found to be down-regulated in the presence of exogenous choline (14). The SDPM and CDP-choline pathways in P. falciparum converge at the step of synthesis of phosphocholine, with Pfpmt of the SDPM pathway methylating phosphoethanolamine to phosphocholine and choline kinase of the CDP-choline pathway phosphorylating choline to phosphocholine. This raises the possibility that the two routes might be coregulated.
The data presented here provide evidence that exogenous choline leads to repression of transcription and induction of the proteasomal degradation of Pfpmt. Supplementation of parasite cultures with exogenous choline produced a dose-response reduction in the amount of both PfPMT transcript and protein in the parasite. Whereas choline induced a dose-dependent down-regulation of PfPMT transcription driven by the endogenous promoter, it had no effect on the transcription of PfPMT driven by the calmodulin promoter. This indicates that the PfPMT promoter might contain repression sites that are activated by choline or phosphocholine, the immediate product of choline kinase and Pfpmt enzyme activities. Alternatively, choline may activate a specific repressor that binds these sites. Future work must uncover promoter elements responsible for choline-induced repression of PfPMT transcription and identify the protein factors involved.
By monitoring the steady-state levels of Pfpmt protein, we found that choline also induced the down-regulation of Pfpmt protein in a dose- and time-dependent manner when the gene was expressed from a strong heterologous promoter. This suggests that choline regulates Pfpmt posttranscriptionally.
We investigated the involvement of the proteasomal proteolytic activity in the possible degradation of the Pfpmt protein. The proteasome is a large complex composed of two multisubunit structures, the 20S and the 19S complexes, that combine to form the 26S particles in which protein degradation occurs (6). Bortezomib is a dipeptidyl boronic acid that specifically and selectively inhibits the activity of the 26S proteasome (1). Recent studies have shown that this compound inhibits the growth of chloroquine- and pyrimethamine-sensitive and -resistant strains of P. falciparum with an approximate 50% inhibitory concentration of 30 nM (J. M. Reynolds et al., unpublished data). Interestingly, bortezomib significantly inhibited choline-induced repression of the Pfpmt protein, implying that the proteasome activity is responsible for Pfpmt degradation in the presence of choline.
In conclusion, our findings show that exogenous choline, a substrate utilized by the CDP-choline pathway to synthesize phosphocholine, induces a dose-dependent repression of PfPMT transcription and activates proteasome-mediated degradation of the enzyme. We postulate that as the parasite actively transports and phosphorylates host choline, a buildup of phosphocholine occurs which in turn initiates degradation of Pfpmt. The physiological importance of this regulation during malaria infection remains to be investigated.
This research was supported by NIH and DOD grants AI51507, AI58962, and PR033005 and BWF award 1006267 to C.B.M. The UCHC General Clinical Research Center is supported by NIH grant M01RR06192. C.B.M. is a recipient of the Burroughs Wellcome Award, Investigators of Pathogenesis of Infectious Disease.
Published ahead of print on 20 July 2007. ![]()
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