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Eukaryotic Cell, November 2007, p. 2018-2028, Vol. 6, No. 11
1535-9778/07/$08.00+0 doi:10.1128/EC.00210-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
,
and
Guan Zhu1,2*
Department of Veterinary Pathobiology, College of Veterinary Medicine & Biomedical Sciences,1 Faculty of Genetics Program, Texas A&M University, College Station, Texas 77843-44672
Received 18 June 2007/ Accepted 28 August 2007
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Relatively common among eukaryotic organisms are the fatty acid elongase-based systems. These elongase-based systems directly elongate a fatty acyl chain esterfied with CoA (fatty acyl-CoA), which is in contrast to the type I and type II FAS systems, which elongate a fatty acyl chain attached to an acyl carrier protein. The elongase system is comprised of at least four enzymes that are responsible for adding two carbon units to the fatty acyl carboxyl end. The chemistry of this pathway is similar to that used by type I and type II FASs. Fatty acyl elongation begins with the condensation of malonyl-CoA with a fatty acyl-CoA catalyzed by the condensing enzyme LCE (ß-ketoacyl-CoA synthase) (Fig. 1, step 1). The resulting ß-ketoacyl-CoA is then two carbons longer and is subsequently reduced to ß-hydroxyacyl-CoA in an NAD(P)H-dependent reaction by ß-ketoacyl-CoA reductase (Fig. 1, step 2). Dehydration occurs through the action of ß-hydroxyacyl-CoA dehydratase to yield enoyl-CoA (Fig. 1, step 3), which is further reduced by enoyl-CoA reductase in an NAD(P)H-dependent manner (Fig. 1, step 4) to yield the elongated fatty acyl-CoA. Whether or not the elongated product is released for use elsewhere in the cell or is retained to undergo another round of elongation depends largely on the specific needs of the organism.
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FIG. 1. The fatty acid elongation system. The diagram displays the four enzymes and fatty acyl-CoA intermediates involved in the two-carbon elongation of fatty acyl-CoAs. The first step is a condensation reaction catalyzed by the "elongase" enzyme (CpLCE1). This is the enzyme that determines chain length and degree of unsaturation of the substrate, and it is the rate-limiting step of the system. The product of the condensation reaction then undergoes reduction by a ß-ketoacyl-CoA reductase (step 2), dehydration by ß-hydroxyacyl-CoA dehydratase (step 3), and a final reduction by enoyl-CoA reductase (step 4). Whether or not the elongated product is utilized elsewhere in the cell or organism or undergoes an additional round(s) of elongation depends largely on the needs of the specific cell/organism at that time.
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To determine the evolutionary relationship of CpLCE1 to elongases from other organisms, we performed maximum-likelihood (ML)-based phylogenetic analyses. The CpLCE1 amino acid sequence was used as a query to search protein databases, including all nonredundant GenBank CDS translations, RefSeq Proteins, PDB, SwissProt, PIR, and PRF at the National Center for Biotechnology Information (NCBI), using the PSI-BLAST program (http://www.ncbi.nlm.nih.gov/BLAST) (2). Elongase sequences from other apicomplexans were also obtained from http://PlasmoDB.org (Plasmodium) and http://ToxoDB.org (Toxoplasma gondii). Four iterative BLAST searches were performed, and only sequences with E values of better than 1 x 104 were selected for phylogenetic analysis.
Multiple-sequence alignments were performed on 75 sequences using the ClustalW algorithm housed in the MacVector v9.5.2 program (MacVector, Inc.), and apparent mistakes in alignment were corrected upon visual inspection. A data set containing 91 unambiguously aligned amino acid positions was used in subsequent analysis. The MrBayes v3.1.2 program (http://mrbayes.csit.fsu.edu/) was used to reconstruct trees using a Bayesian inference method (12). The program was allowed to "jump" among all available amino acid substitution models and to consider among-site rate heterogeneity using a fraction of invariance (Inv) plus a four-rate
-distribution model during Markov chain Monte Carlo analysis. A total of 5 x 106 generations of searches were performed with two independent runs, each containing four chains simultaneously running. The current trees were saved every 1,000 generations. Posterior probability (PP) values at tree nodes were obtained by calculating consensus trees from the last 3,000 Bayesian inference trees that were obtained after the runs converged. In addition, ML analysis was also performed using the PROML program included in the PHYLIP package (http://evolution.gs.washington.edu/phylip.html). The Jones-Taylor-Thornton model (14), with the consideration of Inv and four-rate
that were estimated using the TREE-PUZZLE v.5.2 program (http://www.tree-puzzle.de).
Transcript analysis for CpLCE1 at various developmental stages. Freshly isolated C. parvum oocysts (Iowa strain) purified by Percoll gradient centrifugation and stored in water at 4°C (3) were used to analyze the relative transcript levels for the CpLCE1 gene. Oocysts were excysted in phosphate-buffered saline (PBS) containing 0.1% trypsin and 0.5% taurodeoxycholic acid for 90 min at 37°C to release free sporozoites, which were further purified using a Percoll gradient centrifugation method (29). Intracellular stages of C. parvum were obtained by infecting human HCT-8 cells with oocysts for various times (6 to 72 h). Total RNA was isolated from oocysts, free sporozoites, and intracellular stages using an RNeasy kit (QIAGEN) following the manufacturer's recommended protocol for animal cells. The only addition to RNA isolation using this method was that oocysts were suspended in the recommended lysis buffer and underwent 10 freeze-thaw cycles (liquid nitrogen and 37°C) to disrupt the oocyst wall prior to RNA isolation.
A SYBR green-based real time quantitative reverse transcription-PCR (qRT-PCR) method was used to determine the transcript levels of CpLCE1 at the various developmental stages. The primer pair CpLCE1-F07 (5' TCA CTT TAT CAG AAC CAA CGG TG 3') and CpLCE1-R07 (5' GGC AGT TAC CCA TTC AGC AAG 3') was used to amplify CpLCE1 transcripts. To amplify C. parvum 18S rRNA as a control for normalization, we used the previously reported primers 995F (5' TAG AGA TTG GAG GTT GTT CCT 3') and 1206R (5' CTC CAC CAA CTA AGA ACG GCC 3') (1). The relative level of CpLCE1 transcripts was expressed relative to that of 18S rRNA, and values are reported based on at least three replicates as previously described (5, 28).
Production of antibodies. A short peptide corresponding to a unique internal sequence of CpLCE1 (76FGPKIMEKRKPFKLEKPLKYW) (Fig. 2) was synthesized by the Peptide Core Facility at the Department of Veterinary Pathobiology, Texas A&M University. This short peptide is unique to CpLCE1 and is reasonably antigenic as determined by various antigenicity indexes using the MacVector v9.5.2 program (MacVector, Inc.). Initially, sera from six pathogen-free rats were collected prior to the immunization protocol, of which preimmune sera from two of the six showed no reactivity to dot blot tests using parasite protein extracts. The synthetic peptide was freshly cross-linked to keyhole limpet hemocyanin prior to each immunization. Polyclonal antibodies to CpLCE1 were raised in two pathogen-free rats that were initially immunized with 200 mg of antigen emulsified in an equal volume of Freund complete adjuvant. Booster immunizations (100 mg) were performed at 30 and 60 days, respectively, after the primary immunization. Rat sera were then collected after the immunization protocol, and specificity of the rat polyclonal antibodies was evaluated by dot and Western blot analyses with protein extracts of parasites and host cells.
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FIG. 2. Amino acid sequence comparison of CpLCE1 and representative eukaryotic elongase condensing enzymes. The cDNA-derived amino acid sequence of CpLCE1 (accession no. AAO34582) is aligned with the deduced sequences of Toxoplasma gondii (20.m00392), Plasmodium falciparum (XP_001351023), Trypanosoma cruzi (XP_813971), Leishmania major (CAJ03003), Homo sapiens (NP_076995), Mus musculus (NP_569717), and Gallus gallus (NP_001026710). Amino acids with at least 50% conservation between CpLCE1 and other sequences are shaded. The four highly conserved domains characteristic of the elongase family of enzymes are indicated below the sequence, and the six predicted transmembrane domains are clearly outlined (labeled I to VI). Asterisks indicate the epitope used for antibody production.
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Cloning and expression of CpLCE1. The 972-bp CpLCE1 gene was amplified from C. parvum (Iowa strain) genomic DNA using the high-fidelity Pfu Ultra DNA polymerase (Stratagene) with the primer sets CpLCE1-Fwd (5' gcg aat tcA TGT TCA TAG AAA ATA ATA ATA AT 3') and CpLCE1-Rev (5' gct cta gaA TCG CGC TTA GTT GGT TTT T 3') (lowercase represents artificial EcoRI and XbaI linkers, respectively). The amplified product was directly ligated into the pcDNA3.1/HisC mammalian expression vector (Invitrogen) and transformed into Escherichia coli TOP10 cells (Invitrogen).
Plasmid DNA containing the correct insert (pcDNA3.1/HisC-CpLCE1) and confirmed by sequencing was transfected into human embryonic kidney (HEK)-293T cells. HEK-293T cells were plated in 100-mm tissue culture plates and grown at 37°C in an atmosphere of 5% CO2 in Dulbecco's modified Eagle medium (high glucose) supplemented with 10% fetal bovine serum. At
90% confluence the pcDNA3.1/HisC-CpLCE1 plasmid or the empty plasmid pcDNA3.1/HisC (10 µg) was transfected into cells using Lipofectamine 2000 (Invitrogen) according to the manufacturer's protocol. After transfection, cells were grown for 48 h at 37°C in Dulbecco's modified Eagle medium plus 10% fetal bovine serum.
Confirmation of transfection and protein expression. At 48 hours after transfection of HEK-293T cells, total RNA was isolated from CpLCE1- and pcDNA3.1/HisC-transfected cultures and nontransfected cultures (as a negative control) using an RNeasy minikit (QIAGEN) following the manufacturer's protocol. The vector-specific T7-Fwd and BGH-Rev primers were used in conjunction with the one-step RT-PCR kit (QIAGEN) to confirm positive transfection.
Transfections were also performed in a 24-well format to assess protein expression using immunofluorescence microscopy. Cells were first seeded onto glass coverslips treated with poly-L-lysine and transfected with CpLCE1 or pcDNA3.1/HisC using the method described above while following the recommended protocol for Lipofectamine 2000 transfection in the 24-well format. After incubation for 48 h, cells were fixed with 10% formalin, rinsed with PBS, extracted with –20°C methanol for 5 min, and blocked in 0.5% BSA-PBS for 10 min. Cells were then labeled with anti-CpLCE1 primary antibodies for 1 h in 0.5% BSA-PBS, followed by incubation with secondary antibodies conjugated with TRITC for 1 h in 0.5% BSA-PBS. The samples were washed after each incubation step three times with PBS for 5 min each. All samples were mounted using DAPI and examined using an Olympus BX51 epifluorescence microscope equipped with differential interference contrast and TRITC/DAPI filters. Cultures that were not transfected or that were transfected with pcDNA3.1/HisC were used as negative controls.
Preparation of total membrane transfected cells. TMP fractions were prepared in a method similar to that for preparing microsomal protein (18). At 48 hours posttransfection, cells were washed with PBS and scraped into 5 ml of ice-cold 250 mM sucrose, 20 mM HEPES (pH 7.5) containing a mammalian protease inhibitor cocktail (Sigma). After centrifugation at 1,000 x g for 7 min at 4°C, the cell pellet was resuspended in 3 ml of ice-cold sucrose-HEPES with protease inhibitors. The sample was then Dounce homogenized and centrifuged at 1,000 x g at 4°C to remove large cellular debris. The supernatant was then centrifuged at 100,000 x g for 1 h at 4°C. The supernatant was discarded, and the resulting pellet was resuspended in 500 µl of 100 mM Tris-HCl, 0.1% Triton X-100 (pH 7.4). Protein concentration was determined by a Bradford colorimetric method using BSA as a standard. Aliquots were snap frozen in liquid nitrogen and stored at –80°C. Western blot analysis using the rat anti-CpLCE1 antibodies and monoclonal rabbit anti-rat IgG antibodies was also performed to test for the presence of CpLCE1 in the prepared membrane fractions of transfected cells.
Fatty acyl-CoA elongation assay. Initial activity of the elongation of fatty acyl-CoA by CpLCE1 was determined using variations of a mixture of previously described methods (18, 22, 30, 32). To optimize reaction conditions, a 100-µl reaction mixture containing 50 mM potassium phosphate (pH 6.5), 5 µM rotenone, 20 µM fatty acid-free BSA, 1 mM MgCl2, 0.5 mM NADH, 0.5 mM NADPH, 60 µM palmitoyl-CoA, and 200 µM [2-14C]malonyl-CoA was heated at 37°C for 2 min. The reaction was started with the addition of 30 µg of protein from CpLCE1- or pcDNA3.1/HisC-transfected cells and allowed to proceed for 30 min at 37°C before the addition of 100 µl of 5N KOH in 10% methanol. The samples were then saponified at 65°C for 1 h and cooled to room temperature, when 100 µl each of 5 N HCl and ethanol were added. Radiolabeled incorporated fatty acids were then extracted from the mixture using 1 ml of hexane followed by vigorous mixing and centrifugation at 10,000 x g for 2 min. The upper organic phase was removed, while the lower aqueous phase was washed twice more with 1 ml of hexane. The hexane extracts were pooled and dried under vacuum, and then 5 ml of scintillation fluid was added and the radioactivity was counted in a Beckman Coulter LS 6000SE counter. Activity was determined by subtracting the values obtained for the pcDNA3.1/HisC-transfected samples from the values obtained for the CpLCE1-transfected samples. Reaction mixtures containing no membrane protein were also used as controls to determine additional background levels.
Dependence on NADH or NADPH was determined using the same assay, and the optimum pH for this enzyme was determined using the reaction described above with inclusion of 50 mM potassium phosphate buffer at pH 5.0, 5.5, 6.0, and 6.5 and 50 mM Tris buffer at pH 7.0, 7.5, 8.0, and 8.5. The kinetics for CpLCE1 were similarly assayed using various amounts of palmitoyl-CoA (0.98 to 250 µM), malonyl-CoA (0.98 to 500 µM), and NADPH (3.9 µM to 1 mM).
Substrate preference. Once optimal reaction parameters were known, the substrate preference for CpLCE1 was determined. The fatty acyl-CoA elongation assay used was similar to that described above except it lacked NADH (included 500 µM NADPH) and included 125 µM of various saturated (C2:0 to C24:0) and unsaturated (C18:1, C18:3, C20:4, and C22:6) fatty acyl-CoAs and 250 µM [2-14C]malonyl-CoA. Reaction mixtures included protein fractions from either CpLCE1- or pcDNA3.1/HisC-transfected samples. Activity was determined by subtracting values obtained for the pcDNA3.1/HisC-transfected samples from the values obtained for the CpLCE1-transfected samples. Additionally, substrate preference data were used to test the inhibitory effect of cerulenin, a known inhibitor of both type I and II ß-ketoacyl-CoA synthase, on CpLCE1 using the same reaction conditions as described above and including 0.2 to 200 µM cerulenin.
TLC analysis of elongated fatty acids. The fatty acid elongation reaction was assayed as described above using 30 µg protein from either CpLCE1- or pcDNA3.1/HisC-transfected cells, 250 µM nonradiolabeled malonyl-CoA, and 125 µM of either myristoyl-CoA or palmitoyl-CoA (C14:0-CoA and C16:0-CoA, respectively). Reactions were terminated and fatty acids were extracted as described above. Hexane fractions containing the elongated fatty acids were dried by evaporation under nitrogen before the addition of 3 ml methanol-toluene-sulfuric acid (88:10:2, vol/vol) to convert the extracted fatty acids into their fatty acid methyl ester (FAME) derivatives (11, 30). The suspension was incubated for 1 h at 80°C and allowed to cool to room temperature, and FAMEs were extracted two times with 2 ml hexane. The hexane fractions were once again allowed to evaporate to dryness under nitrogen and were resuspended in 40 µl hexane for thin-layer chromatography (TLC) analysis. Reverse-phase LKC18 silica gel 60-Å TLC plates (Whatman, Inc.) were washed with chloroform-methanol (1:1), followed by incubation at 110°C for 1 h and cooling to room temperature before samples were spotted. The elongated products were separated using methanol-chloroform-water (15:5:1) with authentic FAME standards (Supelco) (25).
HPLC analysis of elongated fatty acids. The elongation assay and FAME preparation used for high-pressure liquid chromatography (HPLC) analysis were replicas of that used for TLC analysis except that the FAMEs were suspended in 200 µl 65% acetonitrile in water instead of 40 µl hexane. FAME derivatives of the elongation products were separated by reverse-phase HPLC using a Shimadzu Prominence HPLC and a Zorbak SB-C18 semipreparative column (5 µm, 9.4 by 250 mm; Agilent Technologies). Injection volumes were 100 µl, and elution was performed using a binary gradient of 95% acetonitrile-5% water at a flow rate of 1.0 ml/min. The absorbance at 205 nm (A205) was monitored using an SPD-M20A diode array detector, and the retention times of the eluted products were compared to those of known FAME standards (Supelco) originally suspended in 65% acetonitrile.
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Phylogenetic relationships among apicomplexan and other eukaryotic elongases. Thousands of elongase homologues were identified from BLAST searching the GenBank protein databases. Because our goal was to obtain information about the evolution of apicomplexan elongases rather than to take a global approach to analyze the elongase protein family, we constructed phylogenetic trees from a total of 75 taxa from a variety of other organisms. Applying a Bayesian analysis to the phylogeny resulted in distinct groups organized both by the type of elongases and, to a minimal extent, by the taxonomy (Fig. 3). Although the apicomplexan elongases do not form a monophyletic clade, all of the protozoans, including both apicomplexans and the kinetoplastids (Trypanosoma and Leishmania), remain clustered together. Similar to the case for previous phylogenetic reconstructions (17), the putative kinetoplastid elongases group together in a clade exclusive to this group of parasites. With respect to putative saturated fatty acid elongases among the apicomplexans, they form two clades, both of which appear to be closely related to the ELO6 family of saturated fatty acid elongases.
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FIG. 3. ML tree derived from 75 elongase sequences (91 amino acid positions) using a Bayesian analysis of phylogeny. PP values at major nodes are indicated as percent values. Solid diamonds, 100%; solid circles, 90 to 99%. These PP values were derived from 3,000 trees obtained after the ML values converged. In the large tree, only the elongase family of proteins are shown as references. The large tree with GenBank gene identification (GI) numbers and species names for all taxa is provided in the supplemental material or can be requested from the corresponding author. Additional ML analysis using the PROML program yielded essentially the same topology shown here.
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FIG. 4. Expression analysis of the CpLCE1 gene in various C. parvum life cycle stages. (A) Relative transcript levels were determined using real-time qRT-PCR. The level of transcripts is normalized using the level of C. parvum 18S rRNA as a control. For all samples, bars represent the standard errors of the means from triplicate reactions. (B) Western blot analysis using polyclonal rat anti-CpLCE1 antibodies of protein extracted from freshly excysted sporozoites.
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FIG. 5. Immunolocalization of CpLCE1 in free sporozoites and in intracellular life stages. (A) Indirect immunolabeling of freshly excysted sporozoites using rat polyclonal antibodies against CpLCE1 along with secondary antibodies conjugated with TRITC. DAPI, used for counterstaining nuclei, is merged with the image on the right. (B) Colocalization of CpLCE1 (TRITC) with parasite TMPs (FITC) of parasites grown for 36 h. The antibodies against parasite TMPs mainly label the PVM and the electron-dense feeder organelle. (C) Dual labeling of intracellular parasites grown for 60 h indicating that CpLCE1 colocalizes with CpACBP1, which has previously been shown to colocalize with parasite TMPs, most likely at the PVM. Phase, phase-contrast microscopy; DIC, differential interference contrast microscopy. Bars, 5 µm.
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Successful transfection and protein expression using this method were analyzed using RT-PCR, Western blotting, and immunolabeling. Total RNA was isolated from cells transfected with either CpLCE1 or pcDNA3.1/HisC (and nontransfected cells as a negative control) at 48 h after transfection, and vector-specific primers were used during RT-PCR to confirm positive transfection. Amplicons of the correct size corresponding to pcDNA3.1/HisC- and CpLCE1-transfected cells were observed (259 bp and 1,195 bp, respectively) (Fig. 6A).
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FIG. 6. Confirmation of successful transfection and expression of CpLCE1. (A) At 48 h posttransfection, total RNA was isolated from cells transfected with CpLCE1 or the empty vector and from nontransfected cells. RT-PCR analysis viewed on a 2% agarose gel indicated that both the vector and the vector containing the CpLCE1 construct were effectively transfected. (B) Western blot analysis of the purified membrane fractions from cells transfected with CpLCE1 or pcDNA3.1/HisC. Eighty micrograms of protein from each fraction was separated on a 10% sodium dodecyl sulfate-polyacrylamide gel, transferred to nitrocellulose, and labeled with rat polyclonal antibodies against CpLCE1. Further incubation with rabbit anti-rat antibodies conjugated to alkaline phosphatase followed by development with 5-bromo-4-chloro-3-indolylphosphate resulted in a single band corresponding to CpLCE1. (C) Immunofluorescence detection of CpLCE1 protein expression. Nontransfected cells were used as a negative control. Clearly, the fluorescence intensity when labeling with rat anti-CpLCE1 antibodies followed by rabbit anti-rat IgG conjugated to TRITC was highest in cells transfected with CpLCE1. A 35-fold increase in exposure time (280 ms versus 9.8 s) was required to detect only minor fluorescence intensity in pcDNA3.1/HisC-transfected cells (comparable to nontransfected cells; both are shown as insets).
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Determination of enzyme activity. It is imperative that we first clarify the elongation assay in order for the results to be appropriately understood. The membrane preparations of HEK-293T cells used in this study contain all four enzymes of the elongase system. Thus, in samples that have been transfected with CpLCE1, there are two sets of condensing enzymes which are responsible for the incorporation of 14C from [2-14C]malonyl-CoA. The products formed during the initial condensation reaction (catalyzed by the native elongase and by CpLCE1) then proceed through the subsequent three steps of the elongation system (ß-ketoacyl-CoA reductase, ß-hydroxyacyl-CoA dehydratase, and enoyl-CoA reductase) to produce a final two-carbon extended product (see Fig. 1 for reaction details). Therefore, there is detectable background activity that is present when using this heterologous system and must be distinguished from activity produced by recombinant CpLCE1.
Total fatty acid elongation activity was measured in isolated membrane fractions of HEK-293T cells transfected with CpLCE1 and compared with that in HEK-293T cells transfected with the empty vector alone (pcDNA3.1/HisC). Supernatant fractions resulting from the membrane purification process were also used as controls. Palmitoyl-CoA (C16:0-CoA) was initially chosen as the fatty acid substrate for the elongation assay, which measured the incorporation of 14C from [2-14C]malonyl-CoA into elongated fatty acid products. Total elongation activity was increased in the membrane fractions from CpLCE1-transfected cells compared to cells transfected with the empty vector (Fig. 7A). The activities detected in the supernatant fractions of CpLCE1- and pcDNA3.1/HisC-transfected cells were not significantly different from each other but were significantly higher than the activity detected in the membrane fractions (Fig. 7A). The activity in the supernatant fractions is expected due to the soluble enzymes that use malonyl-CoA as a cosubstrate, such as the soluble FAS enzymes. Thus, in agreement with Western blot and immunofluorescent analysis (Fig. 6B and C, respectively) the CpLCE1 activity is contained in the membrane fractions of cells transfected with CpLCE1.
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FIG. 7. Elongase activity determination and NADPH dependence. (A) The final pellet fraction after membrane purification of CpLCE1-transfected cells displayed higher elongase activity than that from cells transfected with the empty vector. Both NADH and NADPH were used as cosubstrates. The high activity observed in the soluble fractions likely results from soluble proteins utilizing malonyl-CoA and NAD(P)H. (B) Total elongation activity as measured when including various combinations of NAD(P)H. As expected, the most significant difference among fractions containing CpLCE1 and control fractions was observed when using NADPH as the sole cosubstrate. Values were obtained by subtracting the activity detected using fractions from cells transfected with the empty vector. Values are represented as pmol/min/mg of TMP. In all samples, bars represent the standard errors of the means from triplicate reactions.
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Optimization of CpLCE1 assay and enzyme kinetics. Because palmitoyl-CoA could serve as a substrate for CpLCE1, it was used to optimize the conditions of the elongation reaction prior to testing additional fatty acid substrates to determine substrate specificity. The highest rate of [14C]malonyl-CoA incorporation into elongated fatty acid products was observed when the concentration of palmitoyl-CoA was 125 µM (Fig. 8A). Additionally, enzyme kinetics analysis revealed that CpLCE1 displayed typical Michaelis-Menten kinetics towards palmitoyl-CoA (h = 1, Km = 73.30 µM, and Vmax = 67.64 U [1 U = 1 pmol/min/mg of TMP]) (Fig. 8A). However, further analysis indicated that the CpLCE1 kinetics actually fit better to a sigmoidal curve (r2 = 0.9707 versus 0.9577), indicating the presence of positive cooperativity (Fig. 8A). Under the consideration of cooperativity, the values for K50 (equivalent to Km) and Vmax were determined to be 43.76 µM and 52.74 U, respectively. Analysis of the kinetics of CpLCE1 towards malonyl-CoA revealed similarities to that observed towards palmitoyl-CoA. While the optimal concentration of malonyl-CoA was 250 µM, CpLCE1 displayed a slightly better fit to a sigmoidal curve (Fig. 8B) (r2 = 0.9387). This is a slight negative cooperativity with a K50 of 15.45 µM and a Vmax of 50.97 U compared to the general Michaelis-Menten kinetics (Fig. 8B) (r2 = 0.9265). When using increasing concentrations of NADPH, general Michaelis-Menten kinetics were observed (Fig. 8C), with a Km of 61.53 µM and a Vmax of 62.19 U, and the optimum concentration of NADPH was 500 µM. The observed NADPH kinetics are in respect to the two reduction reactions that occur as a result of activity initiated by CpLCE1, the condensation reaction. Fatty acid elongation activity was also determined to be highest at a pH optimum of 6.5 (Fig. 8D).
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FIG. 8. Enzyme kinetics of the condensation reaction and kinetics and pH optimum for the overall elongation system. (A) Allosteric kinetics assayed with various concentrations of palmitoyl-CoA indicates the presence of positive cooperativity in the condensation reaction (Hill coefficient [h] = 1.727). The optimum palmitoyl-CoA concentration was 125 µM. (B) Allosteric kinetics assayed with various concentrations of malonyl-CoA indicates the presence of negative cooperativity (h = 0.703) with an optimum concentration of 250 µM. (C) Enzyme kinetics assayed with various concentrations of NADPH. As the two reduction steps of the elongation system require NADPH, the results show that when using palmitoyl-CoA as a substrate and CpLCE1 as the condensing enzyme, the elongase system displays general Michaelis-Menten kinetics. (D) The optimum pH of the condensing enzyme is 6.5. Values were obtained by subtracting the activity detected using fractions from cells transfected with the empty vector. Values are represented as pmol/min/mg of TMPs. For all samples, bars represent the standard errors of the means from triplicate reactions.
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FIG. 9. Substrate specificity of CpLCE1. Saturated fatty acyl-CoAs from C2:0 to C24:0 and various unsaturated fatty acyl-CoAs were used to determine the substrate preference of the condensing enzyme. Values were obtained by subtracting the activity detected using fractions from cells transfected with the empty vector. Values are represented as pmol/min/mg of TMPs. For all samples, bars represent the range of values from two sets of triplicate reactions.
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FIG. 10. Fatty acid elongation product analysis using TLC and HPLC. (A) The products of fatty acid elongation were converted to their methyl ester derivatives for analysis using reverse-phase TLC. Both myristoyl-CoA and palmitoyl-CoA (C14:0 and C16:0, respectively) were used as substrates based on the substrate preference data. (B) HPLC analysis of elongation products converted to methyl esters is comparable to that using TLC. The data show that only one round of elongation occurs regardless of the fatty acyl substrate used. Retention times of all samples were compared to those of authentic fatty acid methyl standards. HPLC peaks were detected as A205.
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Inhibition of elongation by cerulenin. Cerulenin is a common eukaryotic and bacterial ß-ketoacyl-[acyl carrier protein] synthase inhibitor. Initially, we tested its inhibitory effects using palmitoyl-CoA as the substrate, where cerulenin displayed a maximum inhibition of 20.5% at a concentration of 200 µM (Fig. 11, solid line). Because differential inhibition of cerulenin has been shown to occur depending on fatty acid chain length (23), we also tested inhibition with myristoyl-CoA as a substrate. However, similar to the case with palmitoyl-CoA as a substrate, cerulenin displayed a maximum inhibition of 32.7% at a concentration of 200 µM (Fig. 11, dotted line). Thus, CpLCE1 appears to be relatively insensitive to cerulenin up to 200 µM when both myristoyl-CoA and palmitoyl-CoA are used as substrates.
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FIG. 11. Inhibitory effect of cerulenin on the activity of CpLCE1. The inhibition effects when using both myristoyl-CoA (C14:0) and palmitoyl-CoA (C16:0) were assayed. Values were obtained by subtracting the activity detected using fractions from cells transfected with the empty vector. Values are represented as total [14C]malonyl-CoA incorporation (pmol) based on a total of 30 µg membrane protein. For all samples, bars represent the range of values from two sets of triplicate reactions.
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Generally, fatty acid elongases are divided into two groups: (i) those involved or suspected to be involved in the elongation of saturated and monounsaturated fatty acids and (ii) those that are responsible for elongation of polyunsaturated fatty acids (13). Those of the first group are typically of the ELO1, -3, and -6 families, whereas the latter group consists of the ELO2, -4, and -5 families. Molecular analyses of CpLCE1 indicated that it contains structural characteristics possessed by the elongase family, including four highly conserved motifs and several predicted transmembrane domains. Furthermore, phylogenetic reconstructions indicate that CpLCE1 is contained within the ELO6 family. This family is suggested to be involved in the elongation of C12:0 to C16:0 saturated fatty acid substrates to C18:0 products and do not have the ability to elongate beyond C18:0 (13). The majority of the kinetoplastid elongases analyzed form a clade with the ELO6-like apicomplexan elongases, suggesting that all of these originated from a common ancestor. Additionally, CpLCE1 appears to be more distant from unsaturated elongase families.
Real-time qRT-PCR indicated that CpLCE1 transcript levels are expressed in all stages of the C. parvum life cycle but are highest in the sporozoites, followed by stages at 36 h and 60 h p.i. In addition to membrane localization in sporozoites, immunostaining has localized CpLCE1 primarily to the PVM, similar to the case for both CpACBP1 and the C. parvum oxysterol binding protein-related protein 1 (CpORP1) (35, 36). Cryptosporidium parvum is an intracellular parasite, but it is considered extracytoplasmic because of being covered by a PVM on the host intestinal epithelial cells (6). Although association with the feeder organelle is still undetermined, it is interesting that CpLCE1 localizes to the PVM along with CpACBP1 and CpORP1, which could possibly be involved in lipid uptake across the PVM (35, 36). Whether CpLCE1 acts in conjunction with these two in either lipid uptake or formation of the PVM is not understood at this time. Regardless, PVM proteins may serve as prime chemotherapeutic and/or immunotherapeutic targets in this parasite, for which fully effective treatment is currently unavailable.
The extreme hydrophobicity of elongase proteins has caused many difficulties in the solubilization and purification of these membrane-bound condensing enzymes and has greatly hindered the biochemical characterization of their defined roles in fatty acid elongation. Nearly all enzymatic studies of these elongase enzymes have been carried out using membrane fractions. Thus, we expressed CpLCE1 in mammalian HEK-293T cells in order to characterize the biochemical features of this enzyme.
Substrate preference revealed that CpLCE1 displays the highest activity when myristoyl-CoA and palmitoyl-CoA (C14:0 and C16:0, respectively) are used as substrates. This is in agreement with phylogenetic reconstructions that grouped CpLCE1 with the ELO6 family of elongases, which generally prefer C12:0 to C16:0 as substrates. It is interesting that CpLCE1 showed little to no preference for all other saturated and unsaturated substrates except for arachidonyl-CoA (C20:4). It is unknown whether this is due to in vitro effects or whether CpLCE1 would potentially have the ability to elongate C20:4 in vivo. Although total lipid analysis studies of C. parvum are lacking, one report suggests that C20:4 comprises only 0.7% of the total neutral fatty acid content in C. parvum and 2.3% and 1.2% in the total phospholipid and phosphatidylcholine content, respectively (20), indicating that C20:4 is present in only small amounts in C. parvum. However, the C22 product of elongation was not detected. No other enzyme involved in C. parvum fatty acid metabolism has displayed preference for an unsaturated substrate, which leads us to believe that elongation of arachidonyl-CoA is an assay artifact.
Analyses of the CpLCE1-catalyzed elongation products indicate that only one round of elongation occurs, thus extending the length of each substrate by only two carbons. The factors that determine exactly how many rounds of elongation occur are unknown and could rely on the needs of the individual cell or organism at the time in which elongation occurs. Our substrate preference data indicated that both myristoyl-CoA and palmitoyl-CoA are capable of serving as substrates. However, it is intriguing that the longest-chain product observed when using C14:0 as a substrate was C16:0. It is not clear why the elongated C16:0 does not serve as a substrate itself and undergo another round of elongation. This could be an artifact due to heterologous assay conditions; however, other elongase enzymes expressed and assayed using similar methods clearly demonstrate as many as three rounds of elongation (21).
Cerulenin was shown to have a minimal effect on inhibition of CpLCE1, with a maximal inhibition of 20.5% and 32.7% when using the substrates C16:0-CoA and C14:0-CoA, respectively. This is interesting due to the ability of cerulenin to efficiently inhibit both type I and type II ß-ketoacyl-CoA synthases, which was the case for the control fractions transfected with pcDNA3.1/HisC. At low concentrations of cerulenin (
2.1 µM), activity was inhibited by 80% and remained constant over the tested concentrations (data not shown). The observed activity of cerulenin on CpLCE1 could be due to two factors: (i) the alkyl chain of cerulenin could be too long to bind to the active site of the enzyme (15), or (ii) the active site serving as the target of cerulenin could be somewhat inaccessible due to the extreme hydrophobicity of the enzyme (34). Elongase enzymes of other types and different families from various organisms have also shown differential inhibition by cerulenin. For example, the plant-type elongases appear to be fairly resistant (9, 25), whereas ELO2 and ELO3 but not ELO1 from Trypanosoma is susceptible (15). Further analyses on the ELO6 family of enzymes as well as elongase enzymes purified to homogeneity are needed in order to fully and accurately determine the effects of cerulenin.
Published ahead of print on 7 September 2007. ![]()
Supplemental material for this article may be found at http://ec.asm.org/. ![]()
Present address: Fort Dodge Animal Health, 800 5th Street, N.W., Fort Dodge, IA 50501. ![]()
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