Eukaryotic Cell, July 2006, p. 991-996, Vol. 5, No. 7
1535-9778/06/$08.00+0 doi:10.1128/EC.00058-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee
Received 24 February 2006/ Accepted 26 April 2006
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The tipped mound elongates into the cylindrical first finger stage in which the spatial arrangement of cell types is retained. The first finger may initiate culmination, in which morphological changes and differentiation of precell types to mature stalk cells and spores occurs to produce the fruiting body, with a spore-filled sorus sitting on top of a cellulosidic stalk. Alternatively, the finger may transition into a slug that migrates until environmental conditions conducive for spore dispersal are sensed. The ability to sense a favorable environment, and hence determine when culmination is appropriate, is mediated by cells within the anterior-most tip of the finger and slug (30). The term transitional period is defined as the time when fingers are transitioning to early culminants, including the variable time spent, if any, as a migrating slug.
At the end of the transitional period, the initiation of culmination is manifest by the formation of a small cone of prestalk AB cells (marked by expression of ecmB) embedded within the prestalk A region (14, 15). The prestalk AB cells derive from a subset of the prestalk A cells at the most anterior tip, termed prestalk A* cells (12). Prestalk AB cells produce a nascent stalk tube into which surrounding prestalk A cells are recruited while the tube elongates toward the substratum (25). The maturing stalk cells within the tube secrete factors that signal to the prespore cells to begin differentiation into mature spores (1, 2), and the maturing spore mass begins moving up the stalk.
The transitional period is influenced by a number of environmental factors, such as humidity, light, temperature, and others (3, 18, 21, 29), that presumably reflect appropriate or inappropriate surroundings for maximizing spore dispersal (23, 31). One means for monitoring the local environment for its suitability for spore dispersal is through the volatile compound ammonia that is produced and subsequently sensed by the developing cells (23). Low local ammonia levels promote culmination, while high concentrations result in slug migration due to their indication of a poor environment for spore dispersal (31). Ammonia is thought to mediate the alternative outcomes of slug migration versus culmination in part via modulation of cyclic AMP (cAMP)-dependent protein kinase A (PKA) (13, 24, 28). Previous work demonstrated that the histidine kinase DhkC controls PKA activity to regulate the slug/culmination choice (16, 28). This is accomplished via a phosphorelay that modulates the activity of the cAMP phosphodiesterase RegA. High ammonia levels result in an active phosphorelay, the activation of RegA, and the inhibition of PKA activity and culmination.
Kirsten and coworkers demonstrated a role for the ammonium transporter C protein (AmtC) in controlling the DhkC phosphorelay (16). Strains lacking AmtC do not culminate, and the resultant slugger phenotype is due to an inability to inhibit the DhkC phosphorelay. It was postulated that AmtC functions as an ammonia sensor and inhibits the phosphorelay in response to low ammonia levels, thus allowing cAMP accumulation to activate PKA and subsequently initiate culmination (16).
Within the tips of amtC null slugs, expression of ecmB, the marker for the initiation of culmination, is blocked. Additionally, STATa-dependent CudA expression in the tip is blocked because STATa nuclear localization does not occur (16). CudA (culmination deficient) is a nuclear protein whose expression in prestalk A* and prestalk AB cells is induced by the transcription factor STATa (12), and whose presence in these cells is required for culmination (11). CudA also is expressed in prespore cells by a STATa-independent mechanism. Nuclear localization of STATa in tip cells normally results from tip-specific production of extracellular cAMP by adenylyl cyclase A (5, 32). Although adenylyl cyclase A expression is misregulated in the amtC null strain, it is expressed in tip cells, yet STATa is not localized to the nuclei. Thus, while cAMP is being produced in tip cells during the transitional period of the amtC mutant strain, an overly active DhkC phosphorelay apparently results in the rapid degradation of cAMP, such that intracellular and extracellular levels do not build up to induce nuclear localization of STATa nor to activate PKA, both of which are required to initiate culmination. This was confirmed by the restoration of STATa nuclear localization, CudA expression, and rescue of the slugger phenotype of the amtC null strain when the DhkC phosphorelay was inactivated by additionally knocking out either dhkC or regA (16).
Herein we report findings on mutant strains lacking another member of the family of putative ammonium transporters, AmtA. Evidence is presented that supports the postulate that AmtA is also an ammonia sensor that regulates the DhkC phosphorelay and the slug/culmination choice. AmtA is proposed to promote slug formation by activating the phosphorelay in response to high ammonia levels.
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Disruption of the amtA gene. To disrupt the amtA gene (dictyBaseID, DDB0185017), a 2,244-bp region of the coding region and upstream sequence was amplified from genomic DNA using the following primers: GGTTCATCATCAGTTGTTC and TATGTATGTTGAAACCTCTGC. The resultant fragment was cloned into the pGEM-T vector (Promega) and digested with MfeI to remove a 375-bp region near the middle of the amtA fragment, resulting in the deletion of the coding region for amino acids 237 through 362 (40% of the transmembrane spanning domains). Either a blasticidin resistance cassette (8) or a hygromycin resistance cassette (7) was inserted to replace the deleted coding region. The resulting plasmids were digested with EcoRI to release the amtA disruption cassette, and the digests were transformed into exponentially growing Ax4 cells (17, 28). Transformants were selected at 20 µg/ml for blasticidin or 30 µg/ml for hygromycin. Clonal isolates were obtained, and disruption of the amtA gene was confirmed by PCR using one primer in the disrupted gene external to the integration site and one from the selection cassette. Multiple independent isolates were obtained, and they all possessed the same phenotype when developed under standard conditions. One of the strains, BS155 (blasticidin resistant), was used in the experiments shown. Disruption of the amtA gene in the amtC null strain BS154 was made using the hygromycin disruption cassette for amtA, as the amtC gene is disrupted in this strain with a blasticidin cassette. Several independent clones were obtained and demonstrated to contain the disrupted amtA gene. Three independently derived strains were examined for development, and all showed the same phenotype; that is, fruits were formed. One of these double null strains (BS165) was used for most of the experiments presented herein. For all amtA null strains (single and double nulls), no amtA mRNA was detectable by reverse transcription (RT)-PCR.
RT-PCR. RNA was isolated from growing cells and from cells at various times after the initiation of development using Trizol (Sigma). RT-PCR was carried out as described previously (19). In all RT-PCRs, oligonucleotides specific for the H7 gene were used as an internal control, as H7 mRNA is expressed at constant levels during growth and all stages of development (34).
Histochemical staining. The lacZ construct for the prestalk-specific promoter ecmAO was generously provided by K. Jermyn and J. Williams and was transformed into Ax4 and null cells by calcium phosphate precipitation or electroporation. Bluo-gal (Sigma) staining of filter-developed cells was performed as described previously (4) with modifications (22).
Monoclonal anti-STATa (D4) and purified anti-CudA (mAB11) serum were kindly provided by J. Williams and M. Fukuzawa. Slugs that had migrated from 1 to 3 h were used for immunohistochemical staining after being developed and harvested as described previously (16).
Microscopy and image processing. Standard development and ß-galactosidase staining results were photographed with a Leica MZ16 stereomicroscope with a Q-Imaging Retiga 1300 camera and Q-Imaging or Simple PCI software. Fluorescent immunohistochemical results were photographed with an Olympus AX70 compound microscope with a Q-Imaging Retiga EXi camera and OpenLab software or on a Zeiss LSM510 inverted confocal microscope with Zeiss laser scanning microscope software. Confocal projections of Z-stacks and reslicing to produce new stacks were done with ImageJ (NIH). Figures were prepared with PhotoStudio (ArcSoft).
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FIG. 1. Developmental morphology of the amtA, amtC, and amtC/amtA null strains and the parental strain Ax4. Cells of each strain were plated for development under standard conditions and photographed at 28 h poststarvation.
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FIG. 2. Growth curves for the amtA null strain and the parental strain Ax4. Axenic cultures were started at 2 x 105 cells per ml and shaken at 21°C. Cells were counted at the indicated times. The inset shows the starting titer and the first three time points at a different scale to demonstrate that the rate difference was observed throughout the growth of the culture. Several independent experiments were performed using different starting titers. The average doubling times during exponential growth from four such experiments were 10.4 h for amtA null cells and 11.2 h for Ax4 cells. amtA cultures averaged a 15 to 20% higher cell titer at the stationary phase.
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Tip expression of CudA and nuclear localization of STATa are recovered in the amtC/amtA double null strain. The inability to inhibit the DhkC phosphorelay in developing amtC null cells leads to the lack of localization of STATa within the nuclei of the anterior tip cells and a consequent lack of production of CudA within the pstA*/AB cells (16). Hence, we examined these molecular events in developing amtC/amtA null cells. When analyzed by RT-PCR, the double null strain exhibited a reduction in cudA mRNA expression during the slug stage that was recovered during culmination (Fig. 3A). This was confirmed with immunohistochemical staining for the CudA protein (Fig. 3B), which importantly showed CudA present in the anterior tip cells. Although there was usually a significant loss of CudA expression during slug migration, nuclear localization of STATa was present (Fig. 4) but at considerably reduced levels relative to that of the wild type. In contrast, slugs of the amtC null strain exhibited no nuclear localization of STATa (Fig. 4) at any time and thus no STATa-induced CudA expression within their tips (16). The recovery of cudA expression to wild-type levels when the amtC/amtA double null strain began culmination was in contrast to the amtC null strain, which continued to have declining levels (Fig. 3A). The presence of CudA in prespore cells, which results from a STATa-independent mechanism, was seen in all three strains but, curiously, also declines during slug migration in both the amtC null and amtC/amtA null strains. Similar to the STATa-dependent tip expression of CudA, prespore expression was restored to wild-type levels at the onset of culmination in the amtC/amtA double null strain.
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FIG. 3. Expression of CudA in the amtC/amtA double null strain and the parental Ax4 and amtC null strains. Growing cells of each strain were harvested and plated for development under standard conditions. Structures were collected after various times of development, and either RNA was isolated for RT-PCR analysis (A) or the multicellular structures were fixed and processed for immunohistochemical staining for the CudA protein (B). RT-PCR was performed using primers for the cudA gene (top band in each panel) and the constitutively expressed H7 gene (bottom band) as a control. TM, tipped mound; 1F, first finger; S, slug (just formed and 6 h later for the amtC null strain); 2F, second finger; EC, early culminant. For spatial localization of CudA during the transitional period, slugs were fixed and immunohistochemically stained after 1 to 3 h of migration. Visualization was with the fluorescent secondary antibody Alexa Fluor 568 (Molecular Probes). White regions are the areas of CudA expression; arrows indicate CudA presence in the tip region. Punctate staining is because CudA is a nuclear protein.
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FIG. 4. Confocal analysis of STATa expression in the amtC/amtA null strain and the parental Ax4 and amtC null strains. Growing cells of each strain were harvested and plated for development under standard conditions. Slugs were harvested and fixed after 1 to 3 h of migration, and immunohistochemical staining was carried out for the STATa protein. Visualization was with the fluorescent secondary antibody Alexa Fluor 568 (Molecular Probes). White regions are the areas of STATa expression. Punctate staining indicates that STATa has translocated to the nucleus. Nonpunctate staining indicates that STATa is present within the cytosol. (A) Projections of the original Z-stacks. Bars, 50 µm. (B) ImageJ (NIH) was used to produce a stack of 1-µm slices of the first 25 µm of the prestalk region on a 90° transverse cross-section to generate a new projection of the tip.
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FIG. 5. Expression of the ecmAO promoter in the amtA, amtC, and amtC/amtA null strains and in the Ax4 parental strain. Cells were transformed with the ecmAO::lacZ plasmid and plated for development. The developing structures were fixed and stained for ß-galactosidase activity. Developmental stages and strains are as labeled. Areas of black indicate expression of the ecmAO promoter.
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amtA null fingers are insensitive to the prolongation of slug migration by ammonia. The inability to culminate and the lack of proper nuclear translocation of STATa in developing amtC null cells are attributable to a misregulated and overly active DhkC phosphorelay (16). AmtC is thought to be an inhibitor of the phosphorelay and has been proposed to be the sensor of low ammonia levels. Given that the loss of AmtA rescues the slugger phenotype and restores nuclear translocation of STATa, we suggest that AmtA also may regulate the DhkC phosphorelay by stimulating the relay and serving as a sensor of high ammonia levels. If true, then cells lacking AmtA would be incapable of perceiving high ammonia levels. The fact that addition of exogenous ammonia to developing cells when they are just forming fingers promotes and prolongs slug migration (23) was used to test this possibility.
Ax4 and amtA null cells were developed to the tipped mound/early finger stage under standard conditions, and one filter of each was transferred to pads soaked with ammonia, while one filter remained on pads without ammonia. As seen in Fig. 6, ammonia prolonged the slug stage for the Ax4 cells, with the time spent in the transitional period increasing from 2 to 3 h to 6 to 7 h. In contrast, the amtA null strain had a transitional period of 1 to 2 h independent of the presence or absence of exogenously added ammonia. The amtC null/amtA null strain also was insensitive to prolongation of the transitional period by ammonia (not shown).
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FIG. 6. Exposure of developing amtA null cells and the parental Ax4 cells to exogenously added ammonia. Cells were developed under standard conditions until fingers had just begun to form (12 to 13 h poststarvation), at which time half of the filters were transferred to pads soaked in 100 mM ammonium phosphate, pH 7.5. Fingers/slugs generally formed within 1 to 1.5 h, and photographs were taken 6 h after fingers had fully formed, 19 to 21 h poststarvation. Four independent experiments were carried out.
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Consistent with this model is the fact that developing amtA null cells possessed a shorter than normal transitional period of 1 to 2 h and rarely formed slugs under standard conditions of development. The parental strain under these conditions had a transitional period of 2 to 3 h, with substantial numbers of slugs forming and migrating briefly prior to their culmination. The minimal transitional period and formation of few to no slugs observed for the amtA null strain is reminiscent of similar behavior that was previously observed for the dhkC null strain (28). In the absence of DhkC, the phosphorelay cannot be activated to inhibit culmination and to promote slug formation. Hence, there is a minimal transitional period and a lack of slug formation, as with the amtA null strain. In addition, the amtA null strain, again like the dhkC null strain (28), was insensitive to the promotion of slug formation and migration by the addition of exogenous ammonia. Finally, the loss of AmtA in the amtC null strain rescued the slugger phenotype of the latter strain.
For the amtC/amtA double null strain, both the inhibition of the DhkC phosphorelay by AmtC in response to low ammonia and the herein-postulated stimulation by AmtA in response to high ammonia would be lacking, perhaps resulting in an "indecisive" state. This seemed to be the case, as the vast majority of double null fingers fell to the substrate, giving an initial field of slugs. However, little to no migration occurred over the next 2 to 4 h as the slugs asynchronously rose and began culmination. Presumably, other environmental cues or signals, either through the DhkC phosphorelay or otherwise, eventually promoted culmination, as the standard conditions used strongly support this choice.
It should be noted that the spatial expression of the amtA gene is consistent with the proposed function of regulating the DhkC phosphorelay. Previous work found amtA to be expressed in various prestalk cell types in a highly dynamic manner, and its expression overlaps spatially with that of amtC and dhkC during the transitional period (10, 16). Specifically, all three genes are expressed in the prestalk region during the transitional period, and amtA and amtC localize to the nascent stalk tube at the initiation of culmination.
While the amtA null strain and the dhkC null strain share phenotypic aberrations, such as bypassing the slug stage, the strains also show differences. Developing amtA cells showed neither the early aggregation nor precocious expression of several aggregation-specific and cell-type-specific genes that occurs in the dhkC null strain (28). Cells lacking AmtA, but not those lacking DhkC, had a slightly enhanced growth rate in axenic cultures. While the fruiting bodies formed by dhkC null cells were morphologically normal, those derived from amtA null cells typically were small, though morphologically normal. These differences suggest that AmtA and the DhkC phosphorelay have additional, nonoverlapping functions independent of their joint role mediating the slug/culmination choice.
Finally, disruption of amtA within this strain did not rescue certain defects seen in prestalk gene expression within developing amtC null cells. An initial delay in ecmAO expression was seen in both strains. However, normal levels of expression in the double null strain were restored as the slugs began transitioning to culminants and were maintained throughout culmination. In contrast, normal levels of ecmAO in amtC null were not observed until after several hours of slug migration and then only transiently, as expression was subsequently lost. Interestingly, a similar pattern of reduced expression followed by recovery to normal levels was seen for CudA expression in the double null strain. The lack of correct prestalk gene expression initially followed by normal expression at the onset of culmination suggests that, without either of the Amt inputs into the DhkC phosphorelay, cAMP levels initially are atypical but are corrected upon input from other environmental signals that promote culmination. Alternatively, the effect of the ammonia transporters on early prestalk gene expression may be independent of the DhkC phosphorelay.
We thank Dao-Qi Zhang and Doug McMahon for assistance with confocal microscopy, Bruce Appel for the use of his Olympus compound microscope, Carol Ann Bonner for assistance in the VUMC Cell Imaging Shared Resource, Tsuyoshi Araki for technical advice, and particularly, Diane Sepich for exhaustive technical advice on all whole-mount techniques and microscopy. We also thank Jeff Williams, Keith Jermyn, and Masashi Fukuzawa for providing plasmids and antibodies.
Experiments were performed in part through the use of the VUMC Cell Imaging Shared Resource (supported by NIH grants CA68485, DK20593, DK58404, HD15052, DK59637, and EY08126).
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