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Eukaryotic Cell, July 2005, p. 1203-1210, Vol. 4, No. 7
1535-9778/05/$08.00+0 doi:10.1128/EC.4.7.1203-1210.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Release from Quorum-Sensing Molecules Triggers Hyphal Formation during Candida albicans Resumption of Growth
Brice Enjalbert1* and
Malcolm Whiteway2
Aberdeen Fungal Group, School of Medical Sciences, Institute of Medical Sciences, University of Aberdeen, Aberdeen AB25 2ZD, United Kingdom,1
Eukaryotic Genetics Group, NRC Biotechnology Research Institute, 6100 Royalmount Avenue, Montreal, Quebec, Canada H4P 2R22
Received 20 January 2005/
Accepted 27 April 2005

ABSTRACT
Candida albicans is a pathogenic fungus able to change morphology
in response to variations in its growth environment. Simple
inoculation of stationary cells into fresh medium at 37°C,
without any other manipulations, appears to be a powerful but
transient inducer of hyphal formation; this process also plays
a significant role in classical serum induction of hyphal formation.
The mechanism appears to involve the release of hyphal repression
caused by quorum-sensing molecules in the growth medium of stationary-phase
cells, and farnesol has a strong but incomplete role in this
process. We used DNA microarray technology to study both the
resumption of growth of
Candida albicans cells and molecular
regulation involving farnesol. Maintaining farnesol in the culture
medium during the resumption of growth both delays and reduces
the induction of hypha-related genes yet triggers expression
of genes encoding drug efflux components. The persistence of
farnesol also prevents the repression of histone genes during
hyphal growth and affects the expression of putative or demonstrated
morphogenesis-regulating cyclin genes, such as
HGC1,
CLN3, and
PCL2. The results suggest a model explaining the triggering
of hyphae in the host based on quorum-sensing molecules.

INTRODUCTION
Candida albicans is an opportunistic fungal pathogen found in
the normal gastrointestinal flora of most healthy humans. It
can cause disorders ranging from localized infections to death,
the latter especially in immunocompromised patients. As is the
case with many fungal pathogens, this yeast is able to use different
morphological forms during host invasion (
14). Although the
link between virulence and morphogenesis is circumstantial,
the changes in morphology are predicted to increase the efficiency
of dissemination in the host (
14). The wide range of morphologies
of
C. albicans is one of its distinguishing features: it can
exist in three common forms (yeast cells, pseudohyphae, and
true hyphal cells) as well as in some less common shapes, like
chlamydospores or opaque cells (
6,
12,
23,
26,
32,
33,
35).
The yeast-to-hyphal transition is the best-documented morphological
transition. Hyphae appear as microscopic tubes with or without
branches; to generate hyphae, budding cells change their growth
mode to a continuous apical extension followed by septation.
Pseudohyphae are created by unipolar budding, with the cells
remaining attached to the mother cell. Both pseudohyphae and
true hyphae produce chains of cells. The difference between
the two can appear minor; however, it is commonly accepted that
true hyphae have no constrictions at their septa, and they have
parallel cell walls with branches forming perpendicular to these
walls (
34).
Wide ranges of both chemicals and environmental conditions have been identified based on their ability to induce the yeast-to-hyphal switch (12, 26, 28). Addition of serum appears to be a powerful trigger with a dependence on low cell density and elevated temperature. Despite the widespread use of this technique to induce hyphae, the inherent mechanism is still poorly understood. Hudson et al. (16) recently suggested that the active role of serum is mainly the result of its nutrient properties (nitrogen and carbon). Another poorly understood method of hyphal induction consists of inoculating fresh medium with stationary cells at 37°C (4, 5, 22). Despite its simplicity, this technique is not commonly used (9, 10), although the process may have influenced recent observations (17).
Quorum-sensing molecules allow bacteria to monitor their growth and to control cell density-dependent phenomena. Similar regulatory systems have been recently identified in the eukaryotic pathogen Candida albicans. Hornby et al. (15) identified farnesol as a quorum-sensing molecule responsible for inhibiting hyphal formation in stationary-phase cells. As well, Chen et al. (10) characterized tyrosol as a candidate quorum-sensing molecule involved in abolishing the lag phase preceding the resumption of growth of stationary-phase cells.
In this paper, we reinvestigate the capacity of C. albicans cells to form hyphae when initiating growth from stationary phase and suggest that classical serum-based induction is significantly dependent on this process. The basis of this process appears to be a release from the inhibition caused by quorum-sensing molecules, including farnesol, present in the medium of stationary cells. We performed transcriptional profiling of C. albicans initiating hyphal development due to this trigger both in the presence and in the absence of farnesol in the fresh medium. The results provide information about the transcriptional changes involved in the resumption of growth, in the hyphal development process, and in the mechanism of response to farnesol.

MATERIALS AND METHODS
Growth medium.
Cultures of
C. albicans strain SC5314 (
13) were grown in buffered
yeast extract-peptone-dextrose (YPD) (2% glucose, 2% Bacto peptone,
1% yeast extract)-based medium; the required pH is obtained
by adding the correct proportion of an Na
2HPO
4-NaH
2PO
4 mix to
a 100 mM final concentration. The buffering ensures pH stability
throughout the experiments. Fetal bovine serum was purchased
from Gibco (Grand Island, N.Y.); trans,trans-farnesol was purchased
from Sigma-Aldrich (Oakville, Ontario, Canada).
Culture conditions.
Cells were cultured in a shaking incubator (180 rpm) at 30°C or 37°C. Absorbance was read at 600 nm. Serial dilutions were achieved by lightly inoculating a 4-ml YPD tube from a YPD plate culture no older than 2 weeks. One milliliter of this tube was transferred to a second 4-ml YPD tube; the latter is vortexed and 1 ml taken to inoculate a third tube and so on to generate 10 cultures. After overnight growth, this approach generates a range of growth states from early-exponential- to stationary-phase cells.
The cells were counted under a microscope (40x lens), and about 200 cells were categorized as budded (less than three joined cells), true hyphae (no constriction at the septa, walls remaining parallel throughout the hyphae, and branching perpendicular to the cell walls), or pseudohyphal. Several positions per slide were examined to ensure a representative selection of cells was characterized. Hyphal lengths were measured with the software Openlab (Improvision).
RNA extraction, mRNA purification, cDNA labeling, and microarray analysis.
An overnight culture (optical density at 600 nm [OD600] > 18) was used to initiate the resumption of growth in a volume of 300 ml of buffered YPD at an OD600 of 0.5. Aliquots (50 ml) were removed and centrifuged before being quick-frozen and stored at 80°C at 0, 10, 30, 60, and 180 min following the inoculation. The experiments were done at 30°C or at 37°C; the experiments at 37°C with farnesol were the same as those at 37°C except for the addition of 30 µM farnesol in the medium prior to inoculation. We used slight variations of the methods and microarrays described by Enjalbert et al. (11); results presented consist of the average of four completely independent experiments (two Cy3/Cy5 and two Cy5/Cy3 labelings) except for the 37°C plus farnesol condition (two Cy3/Cy5 and one Cy5/Cy3 labeling). For each experiment and replicate, the control corresponds to the time zero of the same replicate. Detailed protocols and full results can be obtained from the supplementary material (http://candida.bri.nrc.ca/papers/Enjalbert2005/index.cfm).

RESULTS
Dilution of stationary cells is a potent and transient trigger of hyphal induction.
We reinvestigated previous results that demonstrated the potential
of inducing hyphae in
Candida albicans during release from stationary
phase (
4,
5,
21,
22,
31). We confirmed that dilution of cells
grown to stationary phase at 37°C into fresh YPD triggers
induction of hyphae, generating as much as 90% synchronized
hyphal cells after 3 h (Fig.
1). However, this induction is
transient: the hyphae start to produce budded cells after 3
h, so that buds rapidly become the major growth form (Fig.
1).
The initial hyphal structures remain stable through the 15-h
experimental period. We observed no hyphal formation at 37°C
other than those arising from the initial dilution of the stationary-phase
cells.
Connection with serum induction.
Classical serum induction consists of diluting stationary cells
at 30°C into fresh medium at 37°C containing serum (
24).
As this method includes the dilution of stationary-phase cells
and has the same pH and temperature requirements as the preceding
protocol, we investigated the role of stationary-phase conditioning
during serum induction. We measured the capacity of cells to
produce serum-induced hyphae after growth for various times
in fresh YPD at 30°C before the switch to 37°C plus
serum. Figure
2 demonstrates that the cells lose most of their
capacity to produce hyphae with increasing lengths of time at
30°C. Ultimately, transfer of cells growing exponentially
for 24 h to 37°C plus serum triggered hyphal development
in less than 20% of the cells. No hyphae were observed in the
absence of serum with these long-term exponential-phase cells
(data not shown). Thus, the classical serum induction appears
linked to outgrowth from stationary-phase cells even if the
serum possesses genuine inducer properties.
Acquisition of hyphal competence increases with entry into stationary phase.
We investigated at which stage of growth the cells become competent
to produce hyphae (Fig.
3). Diluting different samples at different
phases of growth of a culture results in a range of morphological
behaviors. As seen in Fig.
1, only cells that have exited the
exponential phase of growth can produce hyphae after the reinoculation.
The closer the cells are to stationary phase, the higher is
the percentage of hyphae 3 h after the dilution. Finally, completely
stationary-phase samples are the only ones that generate an
extensive production of true hyphae.
Identification of the inherent mechanism.
There could be several explanations for a requirement of stationary-phase
cells to permit the induction of hyphae: (i) the release of
the frequent cellular contacts found in an environment with
high cell concentration, (ii) the sudden availability of nutrients,
(iii) the exit from stationary phase, or (iv) the release from
inhibitory molecules. To distinguish among these hypotheses,
we transferred stationary-phase cells at high concentration
(OD
600 = 20) into fresh medium (inoculation to OD
600 = 1 to
20) or into water, always at 37°C (Fig.
4a). All of these
conditions triggered germ tube formation, and the germ tube
length was proportional to the cell concentration (Fig.
4b).
The initiation of hyphal development after transfer of the cells
to the fresh medium without dilution (thus maintaining the same
OD) suggests that cellular contacts are not preventing hyphal
formation. Moreover, the induction of hyphae after the transfer
to distilled water makes it unlikely that hyphal induction requires
the nutrients available in the new medium. This result correlates
with and supports the observation of Bell and Chaffin (
4) that
established that 54% of stationary cells diluted in a minimal
medium without a carbon source were able to form germ tubes.
Therefore, a plausible explanation for the induction of hyphae
during the resumption of growth of stationary-phase cells is
a release from the repression generated by inhibitory molecules
present in the conditioned medium.
Release from quorum-sensing molecules triggers hyphal formation.
We studied the impact of the initial medium on hyphal formation
using serial dilutions: we diluted stationary-phase cells from
the first tube into the conditioned media of the other cultures.
As shown in Fig.
5a, there is a clear step between an OD
600 of 5 and an OD
600 of 10 where the medium becomes effective at
inhibiting hyphal development. This observation suggests the
presence of inhibitory quorum-sensing molecules released in
the spent medium by stationary cells. Of the two quorum-sensing
molecules described so far for
C. albicans, only farnesol inhibits
hyphal formation (
10,
15). A 30 µM concentration of this
molecule has been reported to inhibit, by 50%, the hyphal formation
triggered by serum induction (
15). We also found that addition
of 30 µM farnesol to the new medium prior to inoculation
inhibited hyphal formation by 61% ± 18% (Fig.
5b). Unlike
the spent medium, increasing concentrations of farnesol were
not able to completely suppress hyphal formation. In addition,
while the spent medium blocked cells in the yeast form, farnesol
treatment generated a mix of yeast, pseudohyphal, and hyphal
cells. Finally, we found that conditioning exponential-phase
cells with farnesol followed by farnesol removal was not sufficient
to trigger hyphal formation (data not shown). The inability
of farnesol addition to completely mimic the properties of spent
medium suggests the existence of other inhibitor molecules.
Microarray analysis of the resumption of growth.
We monitored the transcriptional reprogramming caused by the
resumption of growth of stationary cells transferred to fresh
medium at 37°C in the presence of farnesol. We took advantage
of the similarity of concentration between the maximum impact
of farnesol on hyphal growth (30 µM) and the in vitro
maximum accumulation of farnesol during stationary phase (10
to 50 µM [
15]). We hypothesized that applying 30 µM
farnesol in the new medium would likely result in a minimal
change of farnesol concentration from that of the spent medium.
As the cells leave stationary phase and resume growth, transcriptional
profiling highlights the induction of ribosomal protein genes
and RNA production components as well as the repression of stationary-phase
genes, like the stress-related genes (supplementary web data).
To bypass the complexity caused by the metabolic changes and
to identify farnesol-dependent components, we compared the responses
of cells resuming growth at 37°C in the presence or absence
of farnesol at different times (Fig.
6, top panel). We examined
whether the same patterns of expression were obtained when we
compared the hyphal form resumption of growth at 37°C to
the yeast form resumption of growth at 30°C. We hypothesized
that the presence of genes in the two comparisons would be the
consequence of the partial hyphal deficiency created by farnesol.
This pattern was observed for the functional groups related
to biogenesis, to organization and properties of the cell wall,
and to ergosterol metabolism as well as the groups described
as "chromatin assembly and disassembly" and "DNA replication."
Beside the morphological consequences, the comparison exposed
the gene sets whose expression was modulated by farnesol independently
of morphology. The quorum-sensing molecule decreases the expression
of some fatty acid oxidation genes after 30 min and creates
cell cycle changes (from G
2/M transition at 60 min to cell separation
at 180 min). The continued presence of farnesol appears to generate
a greater expression of genes implicated in the response to
stress, as well as to drug and DNA damage stimuli. We observed
also an increase in the expression of genes involved in various
metabolic processes, such as alcohol metabolism, iron ion transport,
and lipid metabolism. Recently, Cao et al. (
8) performed a genomic
investigation of farnesol addition to
Candida albicans biofilms.
Despite the use of a dissimilar experimental model and a semicomplete
genome with a different annotation, they identified equivalent
functional categories (i.e., iron transport, cell wall, drug
resistance, and cell cycle) but with very few overlaps for specific
genes (see supplementary web data). This enforces the idea that
the specific presence of farnesol, rather than variations in
concentration, is directly related to the expression of these
genes. Maintaining a similar concentration of farnesol throughout
the experiment leads to the expected variations based on the
morphology of the cells but also causes specific adaptations.
Expression profiles of farnesol-responsive genes.
In order to unravel the quorum-sensing-dependent mechanisms
governing the choice of the growth form, we focused on the functional
categories identified after 10 min of growth. We reasoned that
transcriptional variations observed after 10 min imply that
the cells have already sensed the new conditions and selected
their next growth mode. Figure
7 presents the responses of genes
with farnesol-modulated early variation during the resumption
of growth at 37°C with farnesol, at 30°C, and at 37°C.
Farnesol has a major and expected impact on the hypha-related
genes (Fig.
7A). We observed a delay in the induction of
HWP1,
ECE1, and
RBT1 as well as a reduction in their level of induction.
The mix of cellular forms in the presence of farnesol (Fig.
4b) does not explain the reduction of the level of induction
as simply an intermediary result between the extremes of 30°C
(yeast cells) and 37°C (hyphal cells), because farnesol
results in a total absence of induction for
HWP1,
ECE1, and
RBT1 10 min after the inoculation, and
PHR1 remains noninduced
through the whole time course. One hypothesis could be a direct
impact of farnesol on these genes, with a partial transcriptional
inhibition impairing hyphal growth. However, none of these hypha-related
genes have yet been demonstrated as essential for hyphal development
(
7). So far, the only hypha-specific gene needed for hyphal
induction is
HGC1, which encodes a G
1 cyclin (
36). The early
induction of
HGC1 during hyphal growth, which is blocked by
the presence of farnesol, supports the importance of this gene
in the morphogenesis control (Fig.
7B). Other cyclin-related
genes present an early specific profile in the presence of farnesol:
the G
1/S cyclin gene
CLN3 is repressed, while the G
1/S cyclin
gene
PCL2 no longer displays the strong repression observed
during hyphal growth. Similarly, the repression of the histone
genes during hyphal growth is blocked in the presence of farnesol
in fresh medium or at 30°C (Fig.
7C). This tendency is amplified
after 60 min, with the induction of the histone genes dramatically
opposed to their repression at 37°C without farnesol.
The continued presence of farnesol can trigger specific early
responses (Fig.
7D and E). The glyoxylate and ß-oxidation
pathways are induced by starvation or during macrophage internalization
(
19). Following exit from stationary phase, we observed a reduction
of expression of some of these genes (see supplementary web
data); this repression is enhanced by the presence of farnesol
at the earlier time points (Fig.
7D). We also observed specific
induction of the drug response genes
CDR1 and
CDR2, as well
as the putative aryl-alcohol dehydrogenase
YPL88 that is regulated
by the multidrug transcriptional factors Yrm1 and Yrr1 in
Saccharomyces cerevisiae (
20).

DISCUSSION
This study investigates the mechanism of hyphal induction triggered
by the resumption of growth of
Candida albicans cells held in
stationary phase. Changing the medium of stationary cells is
a strong but transient way to generate hyphae by releasing the
inhibition caused by the conditioned medium. This phenomenon
represents a major component of the process of serum-induced
hyphal development (
24). The quorum-sensing molecule farnesol
is implicated in this process, but its inability to completely
inhibit hyphal development suggests the possible existence of
other unknown inhibitory molecules. We studied the transcriptional
changes due to growth resumption in the presence of farnesol
in fresh medium at 37°C to mimic a continuous farnesol concentration
throughout the experiment. We identified the classes of genes
whose expression was influenced by the presence of farnesol
through comparisons among experiments at 37°C, at 30°C,
and at 37°C in presence of farnesol. This strategy allowed
us to distinguish between the classes identified because of
the morphological differences created by the farnesol (cell
adhesion, cell wall formation, chromatin, DNA replication, and
cell cycle) and those due specifically to the continued presence
of farnesol (drug response and fatty acid oxidation).
Several genes of interest that were influenced by farnesol were identified. The hypha-specific genes RBT1, ECE1, and HWP1 show delayed and reduced induction in the presence of farnesol. However, as these genes are not necessary for hyphal formation, their inhibition likely reflects an effect of the block in hyphal development rather than a cause. Drug response genes are quickly and significantly induced by the continued presence of farnesol in the fresh medium, a response similar to that generated by antimycotic drugs (25, 27, 30). This induction of the Candida drug resistance genes was surprising because 30 µM farnesol should be similar to the farnesol concentration in the conditioned medium of stationary cells (15). The appearance of stress response genes in a specific response to farnesol may indicate that the presence of the quorum-sensing molecule in the fresh medium is creating damage in the cells. However, this farnesol concentration does not reduce growth (15, 29; our unpublished data). Moreover, the glyoxylate and ß-oxidation pathways are not induced as they are in other stress conditions (19; supplementary web data) but in fact are repressed (Fig. 7D). We hypothesize that this response could reflect a misinterpretation of the situation by the cells, due to the artificial presence of the stationary-related quorum-sensing molecule in the new medium.
The presence of cell cycle and histone genes under the influence of farnesol can be more easily related to the choice of the growth form. The set of histone genes is repressed under the hyphal growth conditions and up-regulated at 30°C or in the presence of farnesol. It is likely that their induction reflects the growth requirement of the cells. However, this does not explain the need to reduce the amount of histones during hyphal growth. This suggests other possible functions for histone regulation, especially in morphogenesis. In mammalian cells, hydroxyurea creates a rapid decrease of the histone mRNA pool (3), while in Candida albicans, hydroxyurea is able to induce filament formation (1). It is therefore possible that a decrease in the amount of histone message plays a role in hyphal development. The presence of farnesol in the fresh medium affects the expression profiles of the cell cycle genes PCL2, HGC1, and CLN3. These three genes possess putative or demonstrated function in morphogenesis. In S. cerevisiae, pcl1/2 family mutants display an abnormal cell morphology upon starvation and random budding in diploids (18). The cyclin HGC1 is the only reported hypha-induced gene necessary for hyphal growth (36). Repression of the cyclin gene CLN3 causes yeast cells to develop into hyphae and pseudohyphae (2). The presence of farnesol prevents the PCL2 repression and the HGC1 induction and represses CLN3. Therefore, these cyclins are attractive as potential links between farnesol and morphogenesis.
The triggering of hyphal development through growth resumption of stationary-phase cells appears to be a major component of the standard serum induction process: even if serum brings robustness to this process, its role in initiation may be modest. This could explain some of the difficulties encountered in understanding the mechanism of serum induction (16). Dilution of stationary cells provides a clear bias in the interpretation of results related to the C. albicans morphology switch; true exponential cells should always be used to measure the influence of molecules on hyphal growth. This could help resolve discrepancies in the literature about the effect of molecules that are described as both inducers and repressors of hyphal formation (26).
There have been many investigations aiming to demonstrate which of the yeast or hyphal states represents the virulent form of C. albicans in the host. Odds (26) concluded that both forms are implicated in virulence. One clue is the presence of both yeast cells and hyphae in the majority of established candidosis cases. The suggestion is that each form possesses its own function: hyphae would carry the yeast infection through the cell walls, and yeast would efficiently spread in the bloodstream. Based on this work, we propose that the first step of infection by isolated cells would involve yeast form growth. Yeast cells surrounded by others will be in a high concentration of farnesol and other inhibitors, while cells in contact with the host cells or otherwise isolated will be relieved of this inhibition. Thus, the latter cells would be able to induce hyphae that would allow them to adhere better to the host cell walls and to progress through in order to carry the infection elsewhere (26). This hypothesis could explain the presence of the different types of C. albicans morphologies and the mechanism of their creation.

ACKNOWLEDGMENTS
This work was supported by the Genomics and Health Initiative
of the National Research Council of Canada, by grant CRP004
from the British Council/NRC Collaborative Research Program,
and by CIHR grant MOP-42516 to M.W. B.E. received an NSERC visiting
fellow award through the GHI.
We are grateful to Alistair J. P. Brown and Neil A. R. Gow for comments, and we thank members of the Genetics group for their support.

FOOTNOTES
* Corresponding author. Mailing address: Aberdeen Fungal Group, School of Medical Sciences, Institute of Medical Sciences, University of Aberdeen, Aberdeen AB25 2ZD, United Kingdom. Phone: (44)-1224-555882. Fax: (44)-1224-555844. E-mail:
brice.enjalbert{at}abdn.ac.uk.

This is National Research Council publication number 47468. 

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Eukaryotic Cell, July 2005, p. 1203-1210, Vol. 4, No. 7
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