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Eukaryotic Cell, October 2004, p. 1297-1306, Vol. 3, No. 5
1535-9778/04/$08.00+0 DOI: 10.1128/EC.3.5.1297-1306.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
A Temperature-Sensitive dcw1 Mutant of Saccharomyces cerevisiae Is Cell Cycle Arrested with Small Buds Which Have Aberrant Cell Walls
Hiroshi Kitagaki, Kiyoshi Ito, and Hitoshi Shimoi*
National Research Institute of Brewing, Higashihiroshima, Hiroshima, Japan
Received 9 December 2003/
Accepted 18 June 2004

ABSTRACT
Dcw1p and Dfg5p in
Saccharomyces cerevisiae are homologous proteins
that were previously shown to be involved in cell wall biogenesis
and to be essential for growth. Dcw1p was found to be a glycosylphosphatidylinositol-anchored
membrane protein. To investigate the roles of these proteins
in cell wall biogenesis and cell growth, we constructed mutant
alleles of
DCW1 by random mutagenesis, introduced them into
a
dcw1
dfg5 background, and isolated a temperature-sensitive
mutant, DC61 (
dcw1-3
dfg5). When DC61 cells were incubated at
37°C, most cells had small buds, with areas less than 20%
of those of the mother cells. This result indicates that DC61
cells arrest growth with small buds at 37°C. At 37°C,
fewer DC61 cells had 1N DNA content and most of them still had
a single nucleus located apart from the bud neck. In addition,
in DC61 cells incubated at 37°C, bipolar spindles were not
formed. These results indicate that DC61 cells, when incubated
at 37°C, are cell cycle arrested after DNA replication and
prior to the separation of spindle pole bodies. The small buds
of DC61 accumulated chitin in the bud cortex, and some of them
were lysed, which indicates that they had aberrant cell walls.
A temperature-sensitive
dfg5 mutant, DF66 (
dcw1 dfg5-29), showed
similar phenotypes.
DCW1 and
DFG5 mRNA levels peaked in the
G
1 and S phases, respectively. These results indicate that Dcw1p
and Dfg5p are involved in bud formation through their involvement
in biogenesis of the bud cell wall.

INTRODUCTION
Fungal cells including yeast cells have sturdy shells, i.e.,
cell walls, to endure osmotic stress in their environment. Without
the cell wall, they easily burst and die. The cell wall also
must be plastic so that it can expand outside the lipid bilayer
during growth (
6). Maintaining both plasticity and rigidity
during bud cell wall construction during the cell cycle is a
complex process that involves many factors.
Saccharomyces cerevisiae is a good model for studying this process. In
S. cerevisiae,
when cells reach a critical size in late G
1, they simultaneously
start budding. In the very first stage of budding, when the
shape of the bud is nearly spherical, the newly synthesized
mannoproteins and glucan are uniformly incorporated over the
whole surface of the emerging bud (
10). During the S phase,
DNA replication occurs and the polarized tip growth becomes
predominant as the bud becomes larger (
5,
7). When the size
of the bud is approximately one-third the size of the mother
cell, which coincides with the completion of the S phase, separation
of spindle pole bodies (SPBs) occurs and bipolar spindles are
formed (
3). When the size of the bud is two-thirds the size
of the mother cell, the maturation phase of the bud growth starts
and the cell wall components are again incorporated uniformly
over the whole bud surface (
5,
7,
10). One of the gene products
involved in the construction of the cell wall of the growing
bud is Fks1p, which functions in the biosynthesis of ß-1,3-glucan
(
9), the major constituent of the cell wall. Still, much is
unknown about the construction of other constituents of the
bud cell wall.
We previously showed that Dcw1p and Dfg5p are required for cell growth and cell wall biogenesis and that Dcw1p is a glycosylphosphatidylinositol-anchored membrane protein (16). Subsequently, another group found that Dfg5p of Candida albicans is required for hypha formation at alkaline pH and is found in the cell membrane and cell wall extract fractions (31). To investigate the roles of Dcw1p and Dfg5p, a double disruptant of dcw1 and dfg5 was generated. The double disruptant was transformed with a plasmid containing a functional DFG5 gene under the control of the GAL1 promoter, so that its expression could be shut off by transferring the cells to a glucose-containing medium. When DFG5 expression was repressed, the cells were round and large, and Cwp1p, a major cell wall protein (28), was secreted into the medium. In the absence of DFG5 expression, chitin was delocalized and the amount of chitin was increased. However, even after DFG5 expression is turned off, the cells are considered to continue to have Dfg5p activity until all of the residual Dfg5p is degraded, a process which appears to take about 18 h. In order to see the phenotype of the double disruptant of DCW1 and DFG5, in which the enzymatic activities of Dcw1p and Dfg5p are rapidly destroyed, i.e., to obtain further insight into the enzymatic activities of Dcw1p and Dfg5p, we constructed mutant alleles of DCW1 and DFG5 whose gene products function normally at 25°C but immediately lose most of their activity at 37°C. The mutant containing the dcw1 allele was defective in bud growth, the cell cycle was arrested after DNA replication and prior to the separation of SPBs, and the buds had aberrant cell walls, when incubated at 37°C. The mutant containing the dfg5 allele showed similar phenotypes. These results indicated that Dcw1p and Dfg5p are involved in bud formation through their involvement in biogenesis of the bud cell wall.

MATERIALS AND METHODS
Yeast strains, culture conditions, and synchronization procedure.
The yeast strains used in this work are summarized in Table
1. The yeast strains were grown at 25 or 37°C in YPAD medium,
which contained 1% yeast extract, 2% Bacto Peptone, 0.01% adenine
sulfate, and 2% glucose with or without 1 M sorbitol. For selection
of 5-fluoroorotic acid (5-FOA)-resistant clones, we used medium
containing 0.67% Bacto Yeast Nitrogen Base, 0.08% complete supplement
mixture without uracil (Bio 101), 2% glucose, 50 µg of
uracil/ml, 0.01% adenine sulfate, 0.1% 5-FOA, and 2% agar.
Escherichia coli strain JM109 was used for the preparation of plasmid DNA.
E. coli strains were grown at 37°C in Luria-Bertani broth
containing 100 µg of ampicillin/ml for the selection of
transformants. The cell cycle was synchronized as previously
described (
18) with slight modifications. After wild-type cells
were grown to an optical density at 660 nm (OD
660) of 0.3 in
YPAD, hydroxyurea was added to a final concentration of 0.15
M. The cells were incubated at 30°C for 2 h, washed with
chilled water three times, and incubated in YPAD at 30°C
for the indicated times.
PCR mutagenesis and plasmid construction.
Random mutations in the
DCW1 and
DFG5 genes were generated with
a Gene Morph PCR mutagenesis kit (Stratagene). A
DCW1 or
DFG5 fragment was generated by mutagenic PCR with primers BamDCW1-1
and BamDCW1-2 or BamDFG5-1 and BamDFG5-2 (Table
2), cut with
BamHI, and ligated into BamHI-cut pRS415 (pRS415-
dcw1 or -
dfg5).
The plasmids were amplified in
E. coli, purified with Wizard
Midiprep (Promega), and transformed into strain 56FCF (
dcw1
dfg5 pYC2-
DFG5) (
16). Clones which formed colonies at 25°C
but did not form colonies at 37°C on a glucose-containing
medium were selected and plated on 5-FOA medium to counterselect
for pYC2-
DFG5 (
16), which originally kept 56FCF alive. The plasmids
were extracted from the selected clones and amplified in
E. coli. The amplified plasmids were cut with BamHI and ligated
into BamHI-cut pRS405 (pRS405-
dcw1 or -
dfg5). The plasmids were
transformed into 56FCF and plated on 5-FOA medium to counterselect
for pYC2-
DFG5. Construction of pRS416Y was described in a previous
report (
16). (Plasmid pRS416 contains wild-type
DCW1.) A plasmid
harboring
SPC42-GFP (
1), which encodes green fluorescent protein
(GFP)-tagged Spc42p, a component of SPB (
8), was a kind gift
from John V. Kilmartin.
Fluorescence-activated cell sorting (FACS) analysis.
Cells were grown in YPAD to a density of 5
x 10
6 to 10
x 10
6 cells/ml at 25°C and incubated at 37°C for 3 h. Culture
samples corresponding to 10
7 cells were washed in 1 ml of 0.2
M Tris-HCl (pH 7.5), fixed in 1 ml of 0.2 M Tris-HCl (pH 7.5)
containing 70% ethanol, washed in 1 ml of 0.2 M Tris-HCl (pH
7.5), dissolved in 1 ml of 0.2 M Tris-HCl (pH 7.5) containing
0.25 mg of RNase A (Wako)/ml, incubated at 50°C for 1 h,
mixed with 20 µl of 50-mg/ml proteinase K (Wako), incubated
at 50°C for 1 h, pelleted by centrifugation at 10,000
x g for 2 min, dissolved in 1 ml of 0.2 M Tris-HCl (pH 7.5) containing
16 µg of propidium iodide/ml, incubated at room temperature
for 30 min in a dark room, sonicated, and analyzed by flow cytometry
(Coulter; Epics Elite ESP) (
13).
Cell staining and microscopy.
Cells were grown in YPAD to a density of 5 x 106 to 10 x 106 cells/ml at 25°C; incubated at 37°C for 3 h; and stained with 4',6-diamidino-2-phenylindole (DAPI), Calcofluor white (25), or rhodamine-phalloidin as previously described (2). An indirect immunofluorescence assay was done as previously described (16) using monoclonal antitubulin antibody (Chemicon International) as the first antibody (1:200 dilution in phosphate-buffered saline [PBS]-bovine serum albumin). Microscopic observations were done with a Nikon Eclipse E800 fluorescence microscope equipped with a charge-coupled device camera (ORCA-ER; Hamamatsu). Bud areas were measured with the computer program AQUA LITE (Hamamatsu).
Viability assay (4).
Cells were grown as described above, collected, sonicated, and resuspended in distilled water. Five milliliters of 100 mM Tris-HCl (pH 9.5)-100 mM NaCl-5 mM MgCl2 was mixed with 33 µl of nitroblue tetrazolium (50 mg/ml; Promega) in 70% dimethyl formamide and 16.5 µl of 5-bromo-4-chloro-3-indolylphosphate (50 mg/ml; Promega) in dimethyl formamide to form solution A. Five hundred microliters of solution A was mixed with 5 ml of solution B (0.05 M Gly-HCl [pH 9.7]). The mixture was added to the cell suspension (1:1) and observed with the microscope.
Northern analysis.
Total RNA was isolated, transferred to Hybond XL (Amersham Pharmacia Biotech), and probed with a DNA fragment that was PCR amplified with primers DCW1Probe-1 and -2, DFG5Probe-1 and -2, and ACT1-1 and -2 or an 0.86-kb XhoI-HindIII product of the fragment which was PCR amplified with primers CLN2-1 and CLN2-2.
Statistical analysis.
The significance of differences was determined by using the t test with adjustment for unequal variances (Welch test).

RESULTS
Isolation of DCW1 and DFG5 mutants defective in growth at 37°C.
To obtain a mutant in which the enzymatic function shared by
Dcw1p and Dfg5p is normal at 25°C but is rapidly destroyed
at 37°C, we attempted to generate a mutant that contains
a mutagenized
dcw1 gene and a disrupted
dfg5 gene, or a disrupted
dcw1 gene and a mutagenized
dfg5 gene. To do this, we constructed
mutant alleles of
DCW1 or
DFG5 by mutagenic PCR. The PCR-amplified
fragment was ligated into a plasmid, the plasmid was introduced
into a
dcw1
dfg5 background (56FCF) (
16), and 50 colonies were
obtained from both transformations. From the obtained transformants,
we selected five clones that grew well at 25°C but did not
grow at 37°C (Fig.
1A and B). Sequence analysis revealed
that the open reading frames (ORFs) of
DCW1 and
DFG5 of the
five selected mutants contained three to six point mutations,
all of which were predicted to lead to amino acid substitutions
in Dcw1p or Dfg5p (Table
3). Site-directed mutagenesis of
DCW1 and
DFG5 confirmed that none of the single amino acid substitutions
of the mutants contributes to the temperature-sensitive defects
of Dcw1p and Dfg5p (data not shown). This suggests that more
than one mutation is involved in the temperature-sensitive phenotype,
as was found in other reported mutants (
17,
23,
27). Of these
five mutants, the mutants that contained alleles of
dcw1-
3 and
dfg5-
29 (designated DC61 and DF66, respectively) were selected
for further examination because their growth was clearly shut
off at the nonpermissive temperature (37°C) (Fig.
1A and B).
We confirmed that they formed colonies at 25°C but not
at 37°C (Fig.
2A and B). The temperature sensitivity of
these two mutants was complemented by transforming a plasmid
containing wild-type
DCW1. Both DC61 and DF66 formed colonies
at 37°C in YPAD agar containing 1 M sorbitol, although DF66
grew rather slowly (Fig.
2C). This result indicates that DC61
and DF66 are unable to form colonies at 37°C because of
a cell wall defect. DC61 cells incubated at 37°C for 3 h
could grow again at 25°C (Fig.
1C).
DC61 and DF66 cells arrest growth with small buds at 37°C.
To determine the optimal time for microscopic observations,
we measured the viability of these cells as estimated by CFU
per milliliter. DC61 cells remained viable for 3 h after upshift
to 37°C although they showed increasing loss of viability
after 5 h at 37°C (Fig.
1C). DF66 showed a similar viability
transition (data not shown). From these data, we selected an
incubation time of 3 h at 37°C for further investigation,
because, at this time, the DC61 cells were still viable and
the effect of depletion of the enzymatic activity of Dcw1p and
Dfg5p on living cells could be clearly observed. At this time,
DC61 and DF66 cells incubated at 37°C had significantly
more buds than did the ones incubated at 25°C (Fig.
3A and B)
(
P < 0.05). Under these conditions, most of the cells
had only a single bud. At 25°C, the areas of most of the
buds were between 20 and 80% of the area of the mother cells
(Fig.
3C, upper right panel). However, at 37°C, the areas
of most of the buds of DC61 cells were less than 20% of the
area of the mother cells (Fig.
3C, lower right panel). For the
wild type (DC63), the bud area distributions were not significantly
different between 25 and 37°C (Fig.
3C, left panels). Measurement
of the bud areas of DF66 gave similar results (data not shown).
These results indicate that, in cells depleted of Dcw1p or Dfg5p,
bud emergence is normal but bud growth is defective.
DC61 cells are arrested after DNA replication and prior to the separation of SPBs and show actin delocalization.
The preceding results suggested that, when DC61 cells are incubated
at 37°C, their cell cycle is arrested. This was confirmed
by a FACS analysis, which showed that the ratio of DC61 cells
with 1N DNA content to cells with 2N DNA content was lower in
cells incubated at 37°C (Fig.
4D) than in cells incubated
at 25°C (Fig.
4C). This was not the case with DC63 (Fig.
4A and B). This result indicates that the cell cycle progression
of DC61 is arrested after DNA replication when incubated at
37°C.
We examined the cell cycle of DC61 cells in more detail. The
nucleus of many DC61 cells incubated at 25°C was close to
the bud neck, while the nucleus of almost all DC61 cells incubated
at 37°C was not localized near the bud neck (Fig.
5A). The
percentage of DC61 cells with an elongated distribution of tubulin
was 35.8% at 25°C but only 9.8% at 37°C (Fig.
5B). This
suggested that, in DC61 cells incubated at 37°C for 3 h,
bipolar spindles are not formed. This was confirmed by examining
the state of SPBs by using GFP-tagged Spc42p (
1), which is a
component of SPB (
8). The percentage of DC61 cells with double
dots was 44.6% at 25°C but only 11.6% at 37°C (Fig.
5C). These results clearly indicate that, when incubated at
37°C for 3 h, DC61 cells are arrested prior to SPB separation.
In addition, actin patches were delocalized in DC61 cells incubated
at 37°C for 3 h (Fig.
5D), showing that the polarity of
the cells is lost.
Small buds of DC61 accumulate chitin in the bud cortex and are lysed at 37°C.
To verify that the small buds of DC61 incubated at 37°C
have aberrant cell walls, we examined the distribution of chitin
in the buds. Calcofluor white, a chitin stain, stained only
the bud neck in the DC61 cells incubated at 25°C and wild-type
DC63 cells (Fig.
6A and B). However, in the DC61 cells incubated
at 37°C, it stained the bud cortex, especially the tips
of the small buds. These results indicate that chitin is deposited
in the bud cortex, especially in the tips of the small buds
of DC61 cells incubated at 37°C. We conclude that the abnormal
distribution of chitin is due to a cell wall defect. In addition,
alkaline phosphatase activity, which is normally confined to
the vacuole, was detected in some of the small buds of DC61
incubated at 37°C, indicating that alkaline phosphatase
leaked from the vacuole as a result of a defect of the cell
wall of these buds (Fig.
6C). These results show that the small
buds of DC61 incubated at 37°C have aberrant cell walls.
Accumulations of DCW1 and DFG5 mRNAs are cell cycle and growth phase regulated.
The preceding results indicate that Dcw1p and Dfg5p have important
roles in cell cycle progression. Therefore, we examined whether
mRNA levels of these genes are cell cycle regulated. The mRNA
levels of
DCW1 and
DFG5 peaked at the G
1 and S phases, respectively
(Fig.
7B). These results clearly show that the mRNA levels of
DCW1 and
DFG5 are regulated according to the cell cycle. We
next investigated how the mRNA levels of
DCW1 and
DFG5 vary
among the different growth phases. Genes involved in cell wall
synthesis are differentially transcribed at different growth
phase. Among the genes involved in cell wall biosynthesis, those
required for growth and proliferation are transcribed in the
exponential phase (
35), while those required for protection
against the environment and for long-term survival are transcribed
in the stationary phase (
29,
34). We found that
DCW1 and
DFG5 mRNAs, like
ACT1 mRNA, were abundant in the exponential phase
(Fig.
7B).
ACT1 transcription is elevated during periods of
growth (
19). This shows that
DCW1 and
DFG5 are involved in exponential
growth, which is consistent with the fact that Dcw1p and Dfg5p
are required for normal bud formation.

DISCUSSION
Although it has been indicated that Dcw1p and Dfg5p are involved
in cell wall biogenesis (
16,
33), the concrete step in which
these proteins are involved was not known. In this report, we
showed that cells with temperature-sensitive alleles of
dcw1 (DC61) and
dfg5 (DF66) at the nonpermissive temperature exhibited
three remarkable phenotypes: (i) cessation of bud growth as
shown by small buds, (ii) cell cycle arrest after DNA replication
and prior to SPB separation, and (iii) defective bud cell walls
as shown by chitin accumulation and by alkaline phosphatase
leakage. These phenotypes indicate that Dcw1p and Dfg5p are
required for formation of the cell wall in growing buds. These
results are consistent with the finding that mRNA levels of
DCW1 and
DFG5 are abundant at the G
1 and S phases, respectively,
and in exponentially growing cells. Since the cell wall is a
large complex structure comprised of many constituents including
glucan, chitin, and proteins, many gene products are considered
to be involved in bud cell wall formation. We believe that Dcw1p
and Dfg5p are two of these gene products.
We previously showed that the promoter shutoff of DFG5 in the background of the double disruptant of dcw1 and dfg5 causes a large and round cell morphology, delocalization of chitin, and an increase in the amount of chitin. On the other hand, the dcw1ts (DC61) cells form small buds and cease growing. The difference in the phenotypes in these two strains can be explained by the rate at which the enzymatic function of Dcw1p or Dfg5p disappears. In promoter shutoff cells, depletion of the enzymatic function of Dfg5p depends on the turnover of Dfg5p, because only transcription of DFG5 ceases when cells are transferred to a medium containing glucose. In contrast, in the dcw1ts cells, the enzymatic activity of Dcw1p is thought to be rapidly destroyed when the incubation temperature is increased. Therefore, the effect of the loss of activity of Dcw1p should be clearly observed in dcw1ts cells. The dcw1ts and dfg5ts (DF66) cells could grow at the nonpermissive temperature under osmotic support (i.e., in YPAD agar containing 1 M sorbitol). This is also in contrast to the promoter shutoff cells, which could not grow even under osmotic support. A possible explanation for this phenotype is that the enzymatic activities of Dcw1p or Dfg5p in the DC61 and DF66 cells did not completely disappear at the nonpermissive temperature, whereas the transcription of DFG5 completely disappeared after shutoff of the promoter.
The mRNA levels of DCW1 and DFG5 peaked at the G1 and S phases, respectively (Fig. 7B). The genes involved in the G1-S transition possess SCB (Swi4p-dependent cell cycle box) or MCB (MluI cell cycle box) elements upstream of the ORFs (15). The G1-S transition events include bud growth, cell wall biosynthesis, and DNA replication (12, 14, 20, 24). One of these genes is FKS1, which has SCB and MCB elements. FKS1 mRNA accumulates at the G1 phase, and Fks1p is involved in the construction of the bud cell wall (22, 26). DCW1 also has two SCB elements and two MCB elements upstream of its ORF, and DFG5 has one SCB element upstream of its ORF (Table 4). These findings support our hypothesis that Dcw1p and Dfg5p are involved in bud growth, which is a G1-S transition event. Because the temperature-sensitive mutants of dcw1 and dfg5 show similar phenotypes, they are considered to have similar roles in bud growth. However, Dcw1p is thought to exert its function during initial bud growth late in the G1 phase, while Dfg5 is thought to exert its function when the buds become larger in the S phase.
Suzuki et al. described a new cell cycle checkpoint that ensures
coupling of cell wall synthesis and mitosis (
32). This checkpoint
monitors the progress of cell wall synthesis and causes a cell
cycle arrest after DNA replication and prior to SPB separation
in response to the defect of cell wall synthesis. This checkpoint
was found in an
fks1ts mutant in which an enzyme that catalyzes
ß-1,3-glucan biosynthesis (
9) is deficient at the
nonpermissive temperature. The cell cycle arrest of this
fks1ts mutant is strikingly similar to that of
dcw1ts cells in this
report, suggesting that
dcw1ts cells are cell cycle arrested
by this cell wall integrity checkpoint. In addition to the cell
cycle arrest,
fks1ts cells share several other characteristics
with
dcw1ts cells, including cell lysis, chitin distribution
in the bud tip, and arrest with a small bud (
11). Because Dcw1p
is localized mainly in the membrane and partly in the cell wall
(
16), Dcw1p and Dfg5p might be involved in construction of bud
cell wall components like Fks1p. Because Dcw1p and Dfg5p are
homologous to bacterial glycanases (
16,
21), they might participate
in remodeling of newly synthesized cell wall components. However,
the exact enzymatic functions of Dcw1p and Dfg5p are still unknown.
Closer examination of the cell walls of the
dcw1ts or
dfg5ts cells should clarify their functions.

ACKNOWLEDGMENTS
We thank Masaki Mizunuma for teaching us the procedure for cell
cycle synchronization, John V. Kilmartin for providing the plasmid
harboring
SPC42-GFP, Hiroko Ikeda for FACS analysis, and Mihoko
Tominaga for DNA sequencing.

FOOTNOTES
* Corresponding author. Mailing address: National Research Institute of Brewing, 3-7-1, Kagamiyama, Higashihiroshima, Hiroshima, Japan 739-0046. Phone: (81)824-20-0826. Fax: (81)824-20-0809. E-mail:
simoi{at}nrib.go.jp.


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Eukaryotic Cell, October 2004, p. 1297-1306, Vol. 3, No. 5
1535-9778/04/$08.00+0 DOI: 10.1128/EC.3.5.1297-1306.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.