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Eukaryotic Cell, December 2002, p. 884-894, Vol. 1, No. 6
1535-9778/02/$04.00+0 DOI: 10.1128/EC.1.6.884-894.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1229
Received 5 September 2002/ Accepted 20 September 2002
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Polarized or apical growth in yeast is initiated at specific sites that are marked by bud-site-selection proteins localized to the cell surface (12, 63, 64). Recognition of these cues by a core GTPase module is an important step in the establishment of polarized growth at specific cellular locations (33, 52, 60). Once a site has been chosen, recruitment of the polarity establishment protein Cdc42p and associated proteins initiates polarized growth by directing actin polymerization, polarized secretion, and growth toward the established site (32, 54, 65). In part, these events are accomplished by interaction of Cdc42p with the Gic1p/Gic2p proteins (8, 31) and with the polarisome (21, 70). Polarisome components include Bni1p and Bud6p (2, 21, 70, 78, 95) and Pea2p and Spa2p (13, 23, 77). Polymerization of the actin cytoskeleton by the polarisome is an important regulatory step in directed growth (22, 71, 89) and is dynamic. For example, the Hsl1p and Hsl7p proteins attenuate polarized growth by interaction with the Swe1p protein kinase and the septin ring, at which site septin assembly is monitored (14, 45, 47, 80).
At least two signaling pathways in yeast are capable of redirecting polarized growth: the mating or pheromone response pathway and the filamentous growth pathway. Indeed, these pathways share common components, although the morphological output of the two pathways is quite distinct (42, 67). Activation of the mating pathway by binding of pheromone to its cognate receptor leads to reorientation of cell polarity toward the perceived mate and the formation of a shmoo (29, 40, 48, 75). Several proteins have been characterized that facilitate communication between the polarized growth machinery and the mating pathway. In particular, Far1p links the pheromone receptor and heterotrimeric G-protein to Cdc24p, the guanine nucleotide exchange factor for Cdc42p (9, 55, 82, 96). The Cdc24p-Far1p complex is exported from the nucleus to the site of incipient shmoo formation upon pheromone treatment, where the complex promotes polarization of the actin cytoskeleton (55-57, 79, 88). The Bem1p and (possibly) Mdg1p proteins stabilize Cdc24p at sites of polarized growth (10, 39), and interactions between Bem1p and mating signaling proteins have been described (41, 46). The Afr1p septin-interacting protein also promotes both pheromone-dependent signaling and shmoo formation (19, 27, 35, 36), as does the Akr1p protein (28, 66). Not surprisingly, polarisome components are also required for shmoo formation (13, 21).
Filamentous growth is a response to nutrient limitation characterized by the formation of elongated cells that remain connected in branched chains (15, 26, 67; for reviews, see references 37, 50, and 51). The cues that direct cell polarity during filamentous growth are the same as for vegetative growth (17, 87). Cell elongation during filamentous growth is driven, in part, by the extension of the G2 phase of the cell cycle (1, 38). How the filamentous growth pathway causes the G2 extension is not clear, but it may be mediated by Ste12p-dependent expression of the Cln1p cyclin (43, 49). Multiple signaling pathways are required for filamentous growth, a fact that underscores the complexity of this morphogenetic response (19).
To identify new components that interface between the pheromone response and/or filamentous growth pathway and the cell polarity machinery, we performed a genetic selection for mutants that exhibit enhanced pheromone response pathway activity and screened among these mutants for those with altered morphology. We isolated one mutant, defective in the BUD14 gene, that displayed a hypersensitive response to pheromone, enhanced filamentous growth, and hyperpolarized growth. Genetic analysis suggests that Bud14p attenuates polarized growth by a mechanism independent of the Hsl1p and Hsl7p proteins but dependent upon the polarisome complex. Genetic analysis also supports a connection between Bud14p and the phosphatase Glc7p in polarized growth in yeast.
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1978b background (provided by G. Fink [15]). Disruption of the BUD14 gene was performed using pSL2900. Disruption of BNI1 was performed using plasmid p321, which was provided by C. Boone (21). Disruption of the PEA2 and SPA2 genes was performed using plasmids pNV44 and p210, which were provided by I. Herskowitz (91). Deletion of STE genes was performed using ste12::URA3, ste11::URA3, ste5::URA3, ste20::URA3, and ste4::LEU2 constructs. HSL1 and HSL7 were disrupted using plasmids phsl1::URA3 and phsl7::URA3, which were provided by M. Grunstein (47). Disruption of PBS2 was performed using pSL2602 (85). SY2428 was made ADE1 by isolation of the ADE1 gene from plasmid pSL2901, followed by transformation and selection for Ade+ colonies. Strains containing alleles of GLC7 were provided by M. J. Stark (3) and K. Tatchell (5, 7). A subset of gene disruptions was performed by PCR-based methods that removed the entire open reading frame and replaced it with auxotrophic markers from Candida glabrata (for TRP1, LEU2, and HIS3) or Kluyveromyces lactis (for URA3). Plasmids containing these markers were provided by I. Herskowitz. Other gene disruptions, integrated green fluorescent protein (GFP) fusions, and GAL1 promoter fusions were made by PCR-based methods using plasmids provided by J. Pringle (44). Gene disruptions and integrated promoter and protein fusions were confirmed by PCR Southern analysis and by phenotype. Yeast and bacterial strains were propagated using standard methods (76). YPD and SD media have been described elsewhere (69). Yeast transformations were performed as described previously (25). Bacterial transformations, bacterial DNA preparations, and plasmid constructions were performed using standard methods (72). |
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TABLE 1. Yeast strains
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Plasmids. For genetic analysis of the mutants, deletion derivatives were produced by one- or two-step gene replacement integration using the ste12::URA3 (pSL1311), ste11::URA3 (pSL1094), ste5::URA3 (pSURE; J. Thorner), ste20::URA3 (pEL45 [40]), and ste4::LEU2 (p121 [92]) constructs as reported elsewhere (84). Plasmids pRS313, -314, -315, and -316 have been described previously (81). Plasmid pSL2902 contains bud14::TRP1 and was constructed by cloning the TRP1 gene from pRS304 into the open reading frame of BUD14 on plasmid YCp50BUD14.
Mutant isolation and analysis.
Mutant isolation, dominance-recessive tests, and complementation analysis were performed as described elsewhere (16). Preliminary characterization of a His+ and morphologically interesting mutant,
t6, showed that two nonlinked recessive mutations contributed to FUS1 activation. One of the mutations, which ultimately proved to affect BUD14, conferred a His+ phenotype that cosegregated with the morphological phenotypes. The other mutation caused negligible FUS1 expression and was not characterized further. The BUD14 gene was cloned by transformation of
t6 with a CEN-based genomic library (68, 69). Complementation of the His+ phenotype was assessed by replica plating transformants from SCD-Ura to SCD-Ura-His medium. A single plasmid complemented both the His+ and abnormal morphology phenotypes of the
t6 mutant, and DNA sequence analysis of the complementing plasmid suggested that BUD14 was the complementing gene. Linkage analysis to test whether the cloned gene corresponded to the locus defined by
t6 utilized the fact that BUD14 is adjacent to ADE1. A wild-type strain (ADE1 BUD14 [SY3872]) was mated to the bud14-1 ade1 mutant (SY3871), and the resulting diploid was subjected to segregation analysis. In 20 tetrads, the bud14-1 phenotypes (His+ and elongated morphology) cosegregated with the Ade phenotype. Tests for mating-specific functions were performed as described previously (83).
Protein localization. Indirect immunolocalization of the Cdc3p protein was performed using polyclonal anti-Cdc3p antibodies (provided by J. Pringle [34]) that were purified as described elsewhere (34). Cells were grown to mid-log phase, fixed, permeabilized, and probed using anti-Cdc3p primary and Alexa (A594)-conjugated goat anti-rabbit secondary antibodies (Molecular Probes, Eugene, Oreg. [62]). The localization of GFP-Bud14p was determined by using an integrated, galactose-inducible N-terminal GFP fusion in an otherwise wild-type strain (SY3896). Cells were grown in YPGal to mid-log phase and visualized by microscopy at 100x magnification using a fluorescein isothiocyanate (FITC) filter.
Microscopy. Standard light differential interference contrast (DIC) and fluorescence microscopy using rhodamine and FITC filter sets was performed using an Axioplan 2 microscope (Zeiss, Jena, Germany), a black and white Orca II digital camera (Hamamatsu, Japan), and Openlab software program (Improvision, Coventry, United Kingdom). Only brightness and contrast digital adjustments were performed on photographs.
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TABLE 2. Effect of ste mutations on FUS1 expression and morphology of the bud14 mutant
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Enhanced mating pathway activity and hyperpolarized shmoo morphology in the bud14 mutant.
The BUD14 gene was disrupted to examine the null phenotype and investigate the genetic requirements for the mutant phenotype. The bud14 mutant was slightly more sensitive to pheromone than wild type, as determined by halo assay (Fig. 1A). Quantitation of the rate of shmoo formation in saturating pheromone confirmed bud14's enhanced pheromone sensitivity (Fig. 1B). Microscopic examination of cells exposed to mating pheromone showed that the bud14 mutant had elongated shmoos with narrow necks (Fig. 1C), and in some cases the shmoo tips were irregular. Cells containing numerous vacuoles were also observed (Fig. 1C): 20% of bud14 cells had multiple vacuoles after a 3-h exposure to pheromone, compared to
1% for wild type. Staining using a vacuole-specific dye, FM4-64, confirmed that the vesicles observed in the bud14 mutant were vacuoles (unpublished results).
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FIG. 1. The bud14 mutant has enhanced pheromone sensitivity and hyperpolarized shmoo morphology. (A) Halo assay. Equal concentrations of wild-type (wt) (SY2002) or bud14 mutant (SY3873) cells were spread onto YPD solid agar medium, and 8 µl of 590 µM alpha factor was applied to a disk at the center of the plate. Plates were incubated for 24 h at 30°C and photographed. (B) Shmoo formation over time. Wild-type (SY2002) and bud14 mutant (SY3873) cells were grown to mid-log phase in YPD medium, washed, and resuspended in YPD medium plus 30 µM alpha factor. Cells were incubated at 30°C, and at the times indicated aliquots were removed and shmoos were scored by microscopic examination. For the y axis, # shmoos refers to the number of shmoos observed in counting 100 cells. (In the bud14 mutant, the number of shmoos exceeds the number of cells because some cells formed multiple shmoos). (C) Shmoo morphology. Wild-type (SY2002), bud14 (SY3873), and GAL-BUD14 mutant (SY3881) cells were grown to mid-log phase, washed, and incubated in 30 µM alpha factor for 3 h at 30°C. Strain SY3881 was grown, washed, and induced in YPGal medium. Cells were photographed at 100x, and representative cells are shown. Bar, 5 µm.
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The genetic requirements for FUS1-reporter activation in the bud14 mutant were examined. Disruption of STE20 mostly blocked FUS1 expression in the bud14 mutant, and disruption of STE50, STE11, and STE12 completely blocked it (Table 2). In contrast, disruption of STE4 or STE5 did not completely prevent FUS1 expression, similar to the results obtained with the original bud14-1 isolate (Table 2). The bud14 mutant phenotypes are reminiscent of those of the rga1 mutant (82a, 85). Therefore, we examined the phenotype of an rga1 bud14 double mutant. This mutant exhibits higher FUS1 expression than observed in either single mutant (Table 2), and it also had new morphological defects, including cells with wide bud necks (Table 2). Loss of Pbs2p, the mitogen-activated protein kinase kinase for the HOG pathway (61), is known to cause enhanced signaling in the rga1 mutant and other mutants that stimulate FUS1 expression (15, 59, 85). Disruption of PBS2 in the bud14 mutant caused significantly higher FUS1 expression than that observed in either single mutant, as well as morphological defects (Table 2).
Morphological consequences of deletion or overexpression of BUD14 in ste mutants. The effect of ste mutations on the morphology of the bud14 mutant was examined, based on the supposition that the elongated morphology of bud14 was due to activation of the pheromone response pathway. However, disruption of STE genes failed to suppress the elongated morphology of the bud14 mutant (Table 2). In fact, disruption of STE20 exacerbated the elongated morphology (Fig. 2A) and caused other morphological abnormalities that were not observed in other bud14 ste double mutants (Table 2).
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FIG. 2. Ste20p and Bud14p share a function in polarized growth. (A) Cell morphology. Cells were grown to mid-log phase in YPD medium for bud14 (SY3873) and bud14 ste20 (SY3876) mutants, or in YPGal for GAL-BUD14 (SY3881) and GAL-BUD14 ste20 (SY3884) mutants. Cells were visualized by microscopy and photographed at 100x. (B) Septin localization. Wild-type (wt) (SY3897) or GAL-BUD14 ste20 (SY3905) cells were grown to mid-log phase in YPGal medium at 30°C. Cells were fixed, permeabilized, and probed with anti-Cdc3p antibodies as described in Materials and Methods. For panels A and B, bar = 5 µm. (C) Ste20p is conditionally required in cells lacking or overproducing Bud14p. Equal concentrations of bud14 (SY3898), bud14 ste20 (SY3908), bud14 ste12 (SY3909), GAL-BUD14 (SY3907), GAL-BUD14 ste20 (SY3905), and GAL-BUD14 ste12 mutant (SY3906) cells were spotted onto the indicated solid agar media and incubated at 30 or 37°C as indicated for 2 days (for SCD and SCD 37°C) or 3 days (for YPGal).
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Hyperfilamentous growth in the bud14 mutant.
We speculated that Bud14p might be involved in filamentous growth because of the elongated morphology of the bud14 mutant. Moreover, the original bud14-1 isolate exhibited nonaxial budding and agar invasion in the Sc252JHa background, whereas the wild-type strain did not. Disruption of BUD14 in the filamentous (
1278b) background caused hyperinvasive growth as assessed by the plate-washing assay (Fig. 3A). The bud14 mutant colonies were more ruffled than the wild type, another characteristic of filamentous growth (Fig. 3A) (17). The single cell invasive growth assay (17) showed that the bud14 mutant had distal-pole budding and had elongated cells under glucose-rich conditions, in contrast to axial budding and spherical cells observed for the wild type (Fig. 3B). Under glucose-limiting conditions, bud14 cells were longer than the wild type (Fig. 3B). Prolonged agar invasion, which accentuates the elongated morphology of filamentous cells (17), confirmed that bud14 cells were longer and thinner than the wild type (Fig. 3C). Since the bud14 mutant exhibits hyperfilamentous growth, we infer that Bud14p acts in a manner antagonistic to filamentous growth.
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FIG. 3. The bud14 mutant exhibits hyperfilamentous growth. (A) Plate-washing assay. Equal concentrations of wild-type (wt) (SY3897) and bud14 mutant (SY3898) cells were spotted onto YPD solid agar medium and incubated for 2 days at 30°C. The plate was photographed (left panel), washed, and photographed again (right panel). (B) Single cell invasive growth assay. Equal concentrations of wild-type (SY3897) and bud14 mutant (SY3898) cells were spread onto SCD (+Glc) or SC (-Glc) medium, incubated for 16 h at 25°C, and photographed at 20x. Bar, 10 µm. (C) Prolonged incubation illustrates the difference in cell length between the wild type (upper panel) and the bud14 mutant (lower panel). Equal concentrations of cells were spotted onto YPD medium and grown for 5 days at 30°C. The plate was washed, and the cells were excised from the plate and photographed at 100x. Bar, 5 µm.
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FIG. 4. Contributions of the polarisome and Hsl proteins to the hyperpolarized growth in the bud14 mutant. (A) Combination of bud14 and hsl mutations. Wild-type (wt) (SY3897), bud14 (SY3898), hsl1 (SY3892), hsl7 (SY3893), bud14 hsl1 (SY3894), and bud14 hsl7 mutant (SY3895) cells were grown on YPD solid agar medium for 2 days at 30°C. Cells were removed from the plates, resuspended in water, and photographed at 100x. (B) Mutations that disrupt the polarisome suppress the hyperpolarized growth phenotype conferred by the bud14 mutation. Wild-type (SY3897), bud14 (SY3898), bud14 pea2 (SY3891), bud14 bni1 (SY3890), and bni1 mutant (SY3889) cells were grown on YPD solid agar medium for 2 days at 30°C. Cells were removed from the plates, resuspended in water, and photographed at 100x. For panels A and B, bar = 10 µm. (C) Bni1p is required in cells overexpressing BUD14. Equal concentrations of wild-type (SY3897), bni1 (SY3889), GAL-BUD14 (SY3907), or GAL-BUD14 bni1 (SY3910) mutant cells were spotted onto YPGal solid agar medium and incubated for 2 days at 30°C.
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BUD14 was originally identified in a genetic screen for mutants that in diploid cells exhibit bipolar bud-site-selection defects (58). We also observed a budding defect in haploid cells lacking BUD14. Bud scar staining of the bud14 mutant confirmed an increase in distal-pole budding in haploid cells (Table 3). The distal-pole budding pattern may be a consequence of the hyperpolarized growth of the bud14 mutant, which is known to promote distal-pole budding (17, 78).
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TABLE 3. Bud-site-selection defect in the haploid bud14 mutanta
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FIG. 5. Bud14p localizes to the mother-bud neck and has a role in cytokinesis. (A) GFP-Bud14p localization. Cells containing the galactose-inducible GFP-BUD14 fusion were grown to mid-log phase in YPGal medium at 30°C and examined using DIC (left panel) or a FITC filter (right panel) at 100x. (B) Mislocalization of the septin ring in cells overproducing Bud14p. Cells containing GAL1-BUD14 were grown to mid-log phase in YPGal medium at 30°C. Cells were fixed, permeabilized, and probed with anti-Cdc3p antibodies as described in Materials and Methods. Left panels, DIC; right panels, FITC. For the bottom panels, note the two pairs of septin rings present in the elongated cell. See Fig. 2B for the wild-type control. For panels A and B, bar = 5 µm.
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To determine if Bud14p and Glc7p share a function in polarized growth, double mutant analysis was performed using partial loss-of-function alleles of the essential GLC7 gene (provided by K. Tatchell). The enhanced polarized growth conferred by a bud14 mutation was dramatically exacerbated when combined with the partial loss-of-function allele glc7-132 (Fig. 6A). Cells with wide mother-bud necks were observed in the bud14 glc7-132 double mutant, presumably indicative of cytokinesis defects (Fig. 6A). Moreover, the bud14 glc7-132 double mutant had a conditional growth defect not observed in either single mutant (Fig. 6B). Similar, although less striking, additive effects in the bud14 mutant were observed with partial loss-of-function alleles glc7-133 and glc7-127; no additive effects were observed with a hyperactive allele of GLC7, glc7-109 (data not shown). The glc7-132 allele also partially suppressed the morphological (Fig. 6A) and slow growth (Fig. 6B) defects associated with overexpression of BUD14. Thus, Glc7p and Bud14p share a function related to cell polarity and cytokinesis.
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FIG. 6. Bud14p and Glc7p share a function in polarized growth. (A) Morphology of double mutants. For the four left panels, wild-type (wt) (KT1357), bud14 (SY3899), glc7-132 (KT1706), and bud14 glc7-132 (SY3901) cells were grown to mid-log phase in YPD medium at 30°C and photographed at 100x. Arrows denote wide bud necks. For the two right panels, GAL-BUD14 (SY3899) and GAL-BUD14 glc7-132 (SY3901) cells were grown to mid-log phase in YPGal medium. Bar, 5 µm. (B) Glc7p and Bud14p share a function in cell growth. Equal concentrations of cells described for panel A were spotted onto the indicated media and incubated for 2 days at 30°C or at 37°C as indicated.
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FIG. 7. Glc7p is required for filamentous growth. (A) Plate-washing assay. Equal concentrations of wild-type (wt) (PAY704-1), glc7-10 (PAY700-4), glc7-12 (PAY701-3), and glc7-13 mutant (PAY702-4) cells were spotted onto YPD solid agar medium for 10 days at 30°C. The plate was photographed (left panel), washed, and photographed again (right panel). (B) Invaded cells were observed by microscopic examination of microcolonies on the washed YPD plate shown in panel A, and representative microcolonies were photographed. Bar, 20 µm.
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FIG. 8. Genetic interactions between Bud14p, Ste20p, Glc7p, and the polarisome (Bni1p), and their known roles in polarized growth, mating, and filamentous growth. Arrows denote positive functions, barred lines denote inhibitory functions, and the three stacked lines denote both genetic and physical interactions.
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We speculated that bud14's hyperpolarized growth is a consequence of stimulation of the pheromone response pathway. This possibility was excluded based on the observation that ste mutants (which abolish mating pathway signaling) failed to suppress the elongated morphology of the bud14 mutant. Genetic evidence did, however, suggest that the polarisome was required for the hyperpolarized growth observed in the bud14 mutant (Fig. 8). Thus, Bud14p may be an attenuator of polarized growth distinct from those previously characterized.
Bud14p localizes to sites in the cell where polarized growth occurs (this report and reference 58). For example, Bud14p is localized to the distal pole of the cell, which would position it appropriately to impede polarized growth. The localization of Bud14p to the mother-bud neck may be an alternative way that Bud14p impinges on polarized growth, in that Bud14p may promote cytokinesis. Overproduction of Bud14p caused a defect in cytokinesis, and cytokinesis defects were observed when the bud14 mutation was combined with other mutations. Since overproduction of Bud14p did not affect the morphology of the septin ring itself, Bud14p may have a regulatory function in cytokinesis, as opposed to a role in septin ring biogenesis or stability. It is noteworthy that Bud14p has a putative SH3 domain. Such domains are known to mediate the assembly of large multiprotein complexes, including cell polarity complexes (53).
Glc7p and Bud14p share a function in polarized growth. The type 1 protein phosphatase Glc7p has previously been implicated in polarization of the actin cytoskeleton and morphogenesis (3), and evidence herein suggests that Glc7p may influence polarized growth by a mechanism involving Bud14p (Fig. 8). Disruption of BUD14 in strains containing partial loss-of-function alleles of glc7 caused a morphological defect more severe than either single mutation, and the morphological abnormalities caused by overexpression of BUD14 were partly suppressed by glc7 alleles. Glc7p interacts with Bud14p, and it is plausible that Glc7p dephosphorylates Bud14p to modulate its function. Whether Bud14p is a target of Glc7p or is otherwise involved in Glc7p function remains to be determined, but Bud14p does share other functions with Glc7p, including glycogen accumulation (unpublished results) and growth under vegetative conditions. Indeed, Bud14p and Glc7p both localize to the mother-bud neck (this report and references 7 and 58), suggesting that Glc7p may play a regulatory role in cytokinesis during vegetative growth. Glc7p is known to be required for septin organization during meiosis (86).
Finally, we showed that Glc7p has a role in filamentous growth. Glc7p appears to have a positive role in filamentous growth, whereas Bud14p has a negative role (Fig. 8). Although these proteins seem to have functionally antagonistic roles in filamentous growth, Bud14p and Glc7p both attenuate polarized growth (Fig. 8). That Bud14p and Glc7p apparently function antagonistically in some settings and in concert in other settings is an intriguing puzzle. Resolution of this puzzle will require identification of interacting proteins and an examination of their functions.
This work was supported by research (GM-30027 to G.F.S.) and training (GM19188 for P.J.C.) grants from the U.S. Public Health Service and by a fellowship (AHA120635Z) from the American Heart Association.
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